The 2.0 version of rSNPBase

Variant report

Variant rs10493600
Chromosome Location chr1:77631190-77631191
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77595400-77640400 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr1:77606200-77651600 Weak transcription Aorta Aorta
3 chr1:77614400-77634000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr1:77614400-77634000 Weak transcription Osteobl bone
5 chr1:77614400-77635600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:77614400-77635600 Weak transcription NHDF-Ad bronchial
7 chr1:77614600-77632000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
8 chr1:77616200-77663200 Weak transcription Brain Hippocampus Middle brain
9 chr1:77617200-77636000 Weak transcription HSMM muscle
10 chr1:77618200-77633000 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:77618400-77632200 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:77618400-77633200 Weak transcription Fetal Brain Male brain
13 chr1:77618600-77633000 Weak transcription Stomach Smooth Muscle stomach
14 chr1:77618600-77634600 Weak transcription Right Ventricle heart
15 chr1:77619000-77638000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr1:77619000-77640200 Weak transcription A549 lung
17 chr1:77620200-77633200 Weak transcription Brain Angular Gyrus brain
18 chr1:77621000-77632200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr1:77621000-77641600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:77621800-77634000 Weak transcription Muscle Satellite Cultured Cells --
21 chr1:77622600-77633800 Weak transcription HUVEC blood vessel
22 chr1:77623200-77631400 Weak transcription Spleen Spleen
23 chr1:77623200-77639400 Weak transcription Fetal Lung lung
24 chr1:77623400-77641000 Weak transcription Rectal Smooth Muscle rectum
25 chr1:77625000-77634200 Weak transcription Esophagus oesophagus
26 chr1:77625200-77631600 Strong transcription Primary T helper cells fromperipheralblood blood
27 chr1:77625600-77631800 Weak transcription Fetal Muscle Trunk muscle
28 chr1:77625600-77632400 Strong transcription Primary T regulatory cells fromperipheralblood blood
29 chr1:77625600-77634600 Weak transcription Pancreas Pancrea
30 chr1:77625600-77637800 Weak transcription iPS-18 Cell Line embryonic stem cell
31 chr1:77625800-77633400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr1:77625800-77635200 Weak transcription Fetal Intestine Small intestine
33 chr1:77625800-77640000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr1:77626000-77631800 Strong transcription Primary monocytes fromperipheralblood blood
35 chr1:77626000-77631800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
36 chr1:77626000-77631800 Weak transcription Duodenum Mucosa Duodenum
37 chr1:77626000-77631800 Weak transcription Lung lung
38 chr1:77626000-77634000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:77626000-77635600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:77626000-77637800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:77626000-77639800 Weak transcription Brain Inferior Temporal Lobe brain
42 chr1:77626000-77640600 Weak transcription Brain Substantia Nigra brain
43 chr1:77626000-77662600 Weak transcription Thymus Thymus
44 chr1:77626000-77684200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:77626200-77634000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr1:77626200-77634600 Weak transcription Fetal Thymus thymus
47 chr1:77626200-77637800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr1:77626200-77639400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr1:77626800-77632400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:77626800-77639400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015