Variant report

Variant	rs12136836
Chromosome Location	chr1:155615928-155615929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155615343..155618275-chr1:155618571..155621306,3	MCF-7	breast:
2	chr1:155614938..155616733-chr1:155625916..155628423,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10796951	0.94[AFR][1000 genomes]
rs10796952	0.96[AFR][1000 genomes]
rs2363017	0.83[YRI][hapmap]
rs2666828	0.91[AFR][1000 genomes]
rs2686264	0.94[AFR][1000 genomes]
rs348188	0.91[AFR][1000 genomes]
rs348189	0.92[AFR][1000 genomes]
rs4601579	0.85[AFR][1000 genomes]
rs4638121	0.88[AFR][1000 genomes]
rs485353	0.81[AFR][1000 genomes]
rs492669	0.89[AFR][1000 genomes]
rs4971057	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4971058	0.89[YRI][hapmap];0.96[AFR][1000 genomes]
rs512551	0.85[YRI][hapmap]
rs607036	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs617232	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6427280	0.83[AMR][1000 genomes]
rs6427281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6427282	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs670787	0.92[AFR][1000 genomes]
rs7522259	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7540642	0.86[AFR][1000 genomes]
rs7543447	0.83[AMR][1000 genomes]
rs9426928	0.87[AFR][1000 genomes]
rs9427219	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	esv3431739	chr1:155514331-155664183	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv3388968	chr1:155532335-155658278	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1002390	chr1:155553423-155706930	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv436522	chr1:155559513-155674249	Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv946419	chr1:155561148-155630744	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	esv3360339	chr1:155562157-155683127	Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv547965	chr1:155563152-155688600	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	esv3381327	chr1:155582853-155718436	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155605000-155618000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:155607400-155621200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:155613200-155617400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:155614000-155621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:155614600-155617000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:155614800-155616000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:155614800-155616200	Enhancers	Rectal Smooth Muscle	rectum
8	chr1:155614800-155616400	Enhancers	Primary hematopoietic stem cells	blood
9	chr1:155614800-155616400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:155614800-155616400	Enhancers	Fetal Muscle Leg	muscle
11	chr1:155614800-155616400	Enhancers	Fetal Stomach	stomach
12	chr1:155614800-155616400	Enhancers	Hela-S3	cervix
13	chr1:155614800-155616600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:155614800-155616600	Enhancers	Brain Cingulate Gyrus	brain
15	chr1:155614800-155616600	Enhancers	Brain Substantia Nigra	brain
16	chr1:155614800-155616600	Enhancers	A549	lung
17	chr1:155614800-155616600	Enhancers	NHDF-Ad	bronchial
18	chr1:155614800-155616600	Enhancers	Osteobl	bone
19	chr1:155614800-155616800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:155614800-155616800	Enhancers	Adipose Nuclei	Adipose
21	chr1:155614800-155616800	Enhancers	NHLF	lung
22	chr1:155614800-155617000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:155614800-155617000	Enhancers	NHEK	skin
24	chr1:155614800-155617200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:155614800-155618000	Enhancers	NH-A	brain
26	chr1:155614800-155618800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:155615000-155616000	Enhancers	Right Atrium	heart
28	chr1:155615000-155616400	Enhancers	Duodenum Mucosa	Duodenum
29	chr1:155615000-155616600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr1:155615000-155616600	Enhancers	Brain Angular Gyrus	brain
31	chr1:155615000-155616600	Enhancers	Brain Hippocampus Middle	brain
32	chr1:155615000-155616800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:155615000-155617000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:155615000-155618000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:155615200-155616400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:155615200-155616400	Enhancers	Fetal Brain Female	brain
37	chr1:155615200-155616400	Genic enhancers	HSMM	muscle
38	chr1:155615200-155616600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:155615200-155616800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr1:155615200-155616800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr1:155615200-155621600	Weak transcription	Aorta	Aorta
42	chr1:155615400-155616400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr1:155615400-155616600	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr1:155615400-155616600	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr1:155615400-155616800	Enhancers	Brain Anterior Caudate	brain
46	chr1:155615400-155617000	Flanking Active TSS	HMEC	breast
47	chr1:155615400-155618000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:155615400-155618000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr1:155615400-155628600	Weak transcription	Right Ventricle	heart
50	chr1:155615600-155616400	Weak transcription	Placenta	Placenta

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