Variant report

Variant	rs6427282
Chromosome Location	chr1:155595406-155595407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155585309..155588170-chr1:155594115..155596195,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10796951	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10796952	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12136836	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1831675	0.82[AMR][1000 genomes]
rs2666828	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2686264	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs348188	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs348189	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35264557	0.81[AMR][1000 genomes]
rs4601579	0.83[AFR][1000 genomes]
rs4638121	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs485353	0.81[AFR][1000 genomes]
rs492669	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4971057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4971058	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs607036	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs617232	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6427279	0.80[AFR][1000 genomes]
rs6427280	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6427281	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs670787	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7522259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540642	0.86[AFR][1000 genomes]
rs7543447	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9426928	0.87[AFR][1000 genomes]
rs9427219	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	esv3431739	chr1:155514331-155664183	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv3388968	chr1:155532335-155658278	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1002390	chr1:155553423-155706930	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv436522	chr1:155559513-155674249	Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv946419	chr1:155561148-155630744	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	esv3360339	chr1:155562157-155683127	Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv547965	chr1:155563152-155688600	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	nsv3043	chr1:155574054-155608574	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	n/a
12	esv3381327	chr1:155582853-155718436	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155580600-155597000	Weak transcription	Colonic Mucosa	Colon
2	chr1:155583200-155596000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr1:155583200-155597400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:155583200-155605600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr1:155583200-155605800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:155583400-155605600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:155583400-155605800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr1:155583800-155596000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr1:155583800-155605800	Weak transcription	Primary T cells from cord blood	blood
10	chr1:155584800-155605600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:155585400-155605600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:155592000-155596200	Enhancers	Liver	Liver
13	chr1:155594200-155596400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:155594400-155605600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:155594800-155596600	Enhancers	Placenta	Placenta
16	chr1:155595000-155595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:155595000-155613000	Weak transcription	Osteobl	bone
18	chr1:155595200-155605600	Weak transcription	Primary monocytes fromperipheralblood	blood

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