Variant report

Variant	rs9427219
Chromosome Location	chr1:155635439-155635440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10796951	0.94[AFR][1000 genomes]
rs10796952	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11802649	0.81[AMR][1000 genomes]
rs12136836	0.91[AFR][1000 genomes]
rs1625821	0.89[AMR][1000 genomes]
rs1627630	0.89[AMR][1000 genomes]
rs168343	0.89[AMR][1000 genomes]
rs171168	0.89[AMR][1000 genomes]
rs1749412	0.89[AMR][1000 genomes]
rs1749413	0.89[AMR][1000 genomes]
rs1749414	0.89[AMR][1000 genomes]
rs1749420	0.89[AMR][1000 genomes]
rs1749422	0.89[AMR][1000 genomes]
rs1756242	0.89[AMR][1000 genomes]
rs182979	0.81[AMR][1000 genomes]
rs1886618	0.89[AMR][1000 genomes]
rs2136920	0.89[AMR][1000 genomes]
rs2175389	0.89[AMR][1000 genomes]
rs2363017	0.89[AMR][1000 genomes]
rs2485472	0.89[AMR][1000 genomes]
rs2666828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2686264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2885676	0.89[AMR][1000 genomes]
rs348184	0.89[AMR][1000 genomes]
rs348188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348189	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348190	0.81[AMR][1000 genomes]
rs348191	0.89[AMR][1000 genomes]
rs348194	0.81[AMR][1000 genomes]
rs348197	0.89[AMR][1000 genomes]
rs348199	0.89[AMR][1000 genomes]
rs348200	0.89[AMR][1000 genomes]
rs348207	0.89[AMR][1000 genomes]
rs348208	0.89[AMR][1000 genomes]
rs348209	0.89[AMR][1000 genomes]
rs35264557	1.00[AMR][1000 genomes]
rs4581273	0.89[AMR][1000 genomes]
rs4601579	0.80[AFR][1000 genomes]
rs4638121	0.93[AFR][1000 genomes]
rs485353	0.82[AFR][1000 genomes]
rs492669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4971057	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4971058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs512551	0.89[AMR][1000 genomes]
rs540380	0.89[AMR][1000 genomes]
rs568672	0.89[AMR][1000 genomes]
rs606755	0.89[AMR][1000 genomes]
rs607036	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs617232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6427280	0.82[AFR][1000 genomes]
rs6427281	0.88[AFR][1000 genomes]
rs6427282	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6688399	0.89[AMR][1000 genomes]
rs670787	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs683121	0.81[AMR][1000 genomes]
rs708607	0.89[AMR][1000 genomes]
rs708609	0.89[AMR][1000 genomes]
rs7522259	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7540642	0.91[AFR][1000 genomes]
rs7543447	0.80[AFR][1000 genomes]
rs8179457	0.89[AMR][1000 genomes]
rs822013	0.89[AMR][1000 genomes]
rs822014	0.89[AMR][1000 genomes]
rs822017	0.89[AMR][1000 genomes]
rs822021	0.89[AMR][1000 genomes]
rs822023	0.89[AMR][1000 genomes]
rs822024	0.89[AMR][1000 genomes]
rs822027	0.89[AMR][1000 genomes]
rs822479	0.89[AMR][1000 genomes]
rs822481	0.89[AMR][1000 genomes]
rs822483	0.89[AMR][1000 genomes]
rs822485	0.89[AMR][1000 genomes]
rs822492	0.89[AMR][1000 genomes]
rs822498	0.89[AMR][1000 genomes]
rs822522	0.89[AMR][1000 genomes]
rs866603	0.89[AMR][1000 genomes]
rs9426928	0.96[AFR][1000 genomes]
rs9427221	0.81[AMR][1000 genomes]
rs9427222	0.89[AMR][1000 genomes]
rs9427227	0.89[AMR][1000 genomes]
rs9427229	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	esv3431739	chr1:155514331-155664183	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv3388968	chr1:155532335-155658278	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1002390	chr1:155553423-155706930	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv436522	chr1:155559513-155674249	Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	esv3360339	chr1:155562157-155683127	Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	nsv547965	chr1:155563152-155688600	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	esv3381327	chr1:155582853-155718436	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
11	esv3436971	chr1:155618172-155733386	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
12	esv3338099	chr1:155618190-155733359	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155617800-155637000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:155626600-155641800	Weak transcription	Fetal Heart	heart
3	chr1:155627000-155641000	Strong transcription	Fetal Stomach	stomach
4	chr1:155627000-155657600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:155627200-155636800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:155627200-155639600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:155627200-155640800	Strong transcription	Thymus	Thymus
8	chr1:155627200-155641000	Strong transcription	Fetal Muscle Leg	muscle
9	chr1:155627200-155648200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:155627200-155651600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:155627200-155654000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:155627400-155635800	Weak transcription	Fetal Kidney	kidney
13	chr1:155627600-155650200	Strong transcription	GM12878-XiMat	blood
14	chr1:155627600-155650600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:155627600-155653600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:155627800-155650600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:155628000-155639400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:155628000-155641000	Strong transcription	Fetal Muscle Trunk	muscle
19	chr1:155628000-155641200	Strong transcription	Fetal Intestine Small	intestine
20	chr1:155628000-155641400	Strong transcription	Liver	Liver
21	chr1:155628000-155647600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:155628000-155648000	Strong transcription	Primary hematopoietic stem cells	blood
23	chr1:155628000-155650400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:155628000-155650400	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr1:155628000-155650400	Strong transcription	Stomach Smooth Muscle	stomach
26	chr1:155628000-155650600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr1:155628000-155650600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr1:155628000-155650600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr1:155628000-155650600	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:155628000-155650800	Strong transcription	Primary T cells from cord blood	blood
31	chr1:155628000-155650800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:155628000-155650800	Strong transcription	Placenta	Placenta
33	chr1:155628000-155651600	Strong transcription	Adipose Nuclei	Adipose
34	chr1:155628000-155652000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr1:155628000-155652000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:155628000-155653800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:155628000-155654600	Strong transcription	Fetal Thymus	thymus
38	chr1:155628200-155636800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:155628200-155641000	Strong transcription	Ovary	ovary
40	chr1:155628200-155641400	Strong transcription	Lung	lung
41	chr1:155628200-155643200	Strong transcription	Brain Hippocampus Middle	brain
42	chr1:155628200-155645400	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr1:155628200-155645600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr1:155628200-155647000	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:155628200-155649600	Strong transcription	Brain Cingulate Gyrus	brain
46	chr1:155628200-155649800	Strong transcription	Osteobl	bone
47	chr1:155628200-155650200	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr1:155628200-155650200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:155628200-155650200	Strong transcription	Fetal Intestine Large	intestine
50	chr1:155628200-155650400	Strong transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links