Variant report

Variant	rs822024
Chromosome Location	chr1:155756315-155756316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155755387..155757428-chr1:155757554..155759146,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10796952	0.89[AMR][1000 genomes]
rs1621690	0.92[AFR][1000 genomes]
rs1624846	1.00[ASN][1000 genomes]
rs1625821	1.00[AMR][1000 genomes]
rs1627630	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs168343	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs171168	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749412	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749413	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1749414	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1756242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765280	0.87[AFR][1000 genomes]
rs1765283	0.92[AFR][1000 genomes]
rs1765286	0.92[AFR][1000 genomes]
rs1886618	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2136920	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2175389	1.00[AMR][1000 genomes]
rs2363017	1.00[AMR][1000 genomes]
rs2481623	0.89[AFR][1000 genomes]
rs2485470	0.96[AFR][1000 genomes]
rs2485472	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2666828	0.89[AMR][1000 genomes]
rs2686264	0.89[AMR][1000 genomes]
rs2885676	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2988999	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs348184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348188	0.89[AMR][1000 genomes]
rs348189	0.89[AMR][1000 genomes]
rs348191	1.00[AMR][1000 genomes]
rs348193	0.89[AMR][1000 genomes]
rs348197	1.00[AMR][1000 genomes]
rs348199	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348200	1.00[AMR][1000 genomes]
rs348207	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348208	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348209	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35264557	0.89[AMR][1000 genomes]
rs4581273	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs492669	0.89[AMR][1000 genomes]
rs4971058	0.89[AMR][1000 genomes]
rs512551	1.00[AMR][1000 genomes]
rs540380	1.00[AMR][1000 genomes]
rs568672	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606755	1.00[AMR][1000 genomes]
rs607036	0.89[AMR][1000 genomes]
rs617232	0.89[AMR][1000 genomes]
rs6427290	0.92[AFR][1000 genomes]
rs6688399	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs670787	0.89[AMR][1000 genomes]
rs708607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs708609	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs708613	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8179457	1.00[AMR][1000 genomes]
rs822011	0.81[AFR][1000 genomes]
rs822013	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822014	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822017	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822021	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822023	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822027	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822479	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822481	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822483	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822487	0.89[AFR][1000 genomes]
rs822492	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822496	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs822498	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822522	1.00[AMR][1000 genomes]
rs866603	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427219	0.89[AMR][1000 genomes]
rs9427222	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427227	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427229	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv872469	chr1:155743310-155810293	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155715400-155789200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:155715600-155764600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:155716000-155793400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:155716600-155781800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:155717200-155761000	Strong transcription	Fetal Stomach	stomach
6	chr1:155717400-155795800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:155720200-155756600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:155720200-155798200	Strong transcription	Fetal Thymus	thymus
9	chr1:155720200-155803600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:155720400-155756400	Strong transcription	Liver	Liver
11	chr1:155720400-155760800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr1:155720400-155796800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:155720600-155757200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:155730400-155764200	Weak transcription	Psoas Muscle	Psoas
15	chr1:155732200-155789200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:155734800-155756600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:155737200-155772200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:155743000-155763400	Weak transcription	HMEC	breast
19	chr1:155743200-155773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:155743600-155762200	Weak transcription	NHDF-Ad	bronchial
21	chr1:155744200-155757600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:155745200-155761000	Strong transcription	Fetal Intestine Small	intestine
23	chr1:155746400-155774000	Weak transcription	Pancreas	Pancrea
24	chr1:155746400-155791400	Weak transcription	Stomach Mucosa	stomach
25	chr1:155746600-155763400	Weak transcription	Spleen	Spleen
26	chr1:155746800-155758600	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr1:155747000-155763000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr1:155747000-155764200	Weak transcription	Brain Substantia Nigra	brain
29	chr1:155747200-155763400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:155747400-155763200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:155747600-155764000	Weak transcription	Brain Hippocampus Middle	brain
32	chr1:155747600-155764200	Weak transcription	A549	lung
33	chr1:155747600-155764400	Weak transcription	Ovary	ovary
34	chr1:155747600-155776200	Weak transcription	Right Ventricle	heart
35	chr1:155747600-155787200	Weak transcription	Esophagus	oesophagus
36	chr1:155747800-155762200	Weak transcription	K562	blood
37	chr1:155747800-155762600	Weak transcription	NHLF	lung
38	chr1:155747800-155764400	Weak transcription	NHEK	skin
39	chr1:155747800-155785600	Weak transcription	Fetal Brain Male	brain
40	chr1:155747800-155791200	Weak transcription	Fetal Heart	heart
41	chr1:155748000-155789400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:155748800-155771600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr1:155749600-155756400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr1:155749800-155766400	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr1:155751000-155756800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr1:155751800-155756600	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr1:155751800-155756600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr1:155751800-155756600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:155751800-155756600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr1:155751800-155756800	Strong transcription	Osteobl	bone

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