Variant report

Variant	rs9427222
Chromosome Location	chr1:155688970-155688971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10796952	0.89[AMR][1000 genomes]
rs1625821	1.00[AMR][1000 genomes]
rs1627630	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs168343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs171168	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749412	1.00[AMR][1000 genomes]
rs1749413	1.00[AMR][1000 genomes]
rs1749414	1.00[AMR][1000 genomes]
rs1749420	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749422	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1756242	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765283	0.87[AFR][1000 genomes]
rs1886618	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2136920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2175389	1.00[AMR][1000 genomes]
rs2363017	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2485470	0.83[AFR][1000 genomes]
rs2485472	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2666828	0.89[AMR][1000 genomes]
rs2686264	0.89[AMR][1000 genomes]
rs2885676	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2988999	0.89[AMR][1000 genomes]
rs348184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348188	0.89[AMR][1000 genomes]
rs348189	0.89[AMR][1000 genomes]
rs348191	1.00[AMR][1000 genomes]
rs348193	0.89[AMR][1000 genomes]
rs348197	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348200	1.00[AMR][1000 genomes]
rs348207	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35264557	0.89[AMR][1000 genomes]
rs4581273	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs492669	0.89[AMR][1000 genomes]
rs4971058	0.89[AMR][1000 genomes]
rs512551	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs540380	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs568672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606755	1.00[AMR][1000 genomes]
rs607036	0.89[AMR][1000 genomes]
rs617232	0.89[AMR][1000 genomes]
rs6427290	0.83[AFR][1000 genomes]
rs6688399	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs670787	0.89[AMR][1000 genomes]
rs708607	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs708609	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs708613	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8179457	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822013	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822014	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822017	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822021	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822023	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822024	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822027	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822479	1.00[AMR][1000 genomes]
rs822481	1.00[AMR][1000 genomes]
rs822483	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822485	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822487	0.81[AFR][1000 genomes]
rs822492	1.00[AMR][1000 genomes]
rs822496	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs822498	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822522	1.00[AMR][1000 genomes]
rs866603	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427219	0.89[AMR][1000 genomes]
rs9427227	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427229	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv1002390	chr1:155553423-155706930	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	esv3381327	chr1:155582853-155718436	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv3436971	chr1:155618172-155733386	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	esv3338099	chr1:155618190-155733359	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
9	nsv3065	chr1:155682768-155727524	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155660200-155698800	Weak transcription	NHLF	lung
2	chr1:155660400-155706200	Weak transcription	Colonic Mucosa	Colon
3	chr1:155661600-155707800	Weak transcription	HUVEC	blood vessel
4	chr1:155663200-155701000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:155665200-155708000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:155665400-155695000	Weak transcription	Pancreas	Pancrea
7	chr1:155665400-155699000	Weak transcription	Right Ventricle	heart
8	chr1:155665600-155707200	Weak transcription	Psoas Muscle	Psoas
9	chr1:155665800-155707000	Weak transcription	Small Intestine	intestine
10	chr1:155667600-155689600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:155669200-155702200	Weak transcription	Gastric	stomach
12	chr1:155672800-155698800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr1:155673200-155695000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:155673800-155707800	Weak transcription	Aorta	Aorta
15	chr1:155676000-155695000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:155676400-155689400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:155676400-155691800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:155676400-155695400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:155676400-155698600	Weak transcription	Stomach Mucosa	stomach
20	chr1:155676400-155706200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:155677200-155691400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:155677400-155705200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:155678800-155689000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr1:155679200-155689600	Weak transcription	Thymus	Thymus
25	chr1:155679200-155691800	Weak transcription	Ovary	ovary
26	chr1:155679400-155710400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:155679800-155695200	Weak transcription	Fetal Brain Female	brain
28	chr1:155679800-155704200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr1:155681600-155696800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:155681600-155707800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr1:155681800-155689800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr1:155681800-155690200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr1:155681800-155693600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:155682000-155690200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:155682200-155692000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr1:155682400-155690600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:155682600-155690400	Strong transcription	Placenta	Placenta
38	chr1:155682800-155697200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:155683000-155691200	Weak transcription	HSMMtube	muscle
40	chr1:155683000-155703200	Weak transcription	Spleen	Spleen
41	chr1:155683200-155695200	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr1:155683200-155715000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr1:155683400-155689200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr1:155683400-155699200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr1:155683400-155707800	Weak transcription	Fetal Heart	heart
46	chr1:155683800-155691600	Weak transcription	NH-A	brain
47	chr1:155683800-155692400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr1:155683800-155709000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr1:155683800-155715000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:155684000-155700000	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links