Variant report

Variant	rs822481
Chromosome Location	chr1:155798209-155798210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155769410..155771297-chr1:155796541..155800799,3	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10796952	0.89[AMR][1000 genomes]
rs1621690	0.87[AFR][1000 genomes]
rs1625821	1.00[AMR][1000 genomes]
rs1627630	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs168343	1.00[AMR][1000 genomes]
rs171168	1.00[AMR][1000 genomes]
rs1749412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749414	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749420	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1756242	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765280	0.92[AFR][1000 genomes]
rs1765283	0.87[AFR][1000 genomes]
rs1765286	0.88[AFR][1000 genomes]
rs1886618	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2136920	1.00[AMR][1000 genomes]
rs2175389	1.00[AMR][1000 genomes]
rs2363017	1.00[AMR][1000 genomes]
rs2481623	0.93[AFR][1000 genomes]
rs2485470	0.92[AFR][1000 genomes]
rs2485472	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2666828	0.89[AMR][1000 genomes]
rs2686264	0.89[AMR][1000 genomes]
rs2885676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2988999	0.89[AMR][1000 genomes]
rs348184	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs348188	0.89[AMR][1000 genomes]
rs348189	0.89[AMR][1000 genomes]
rs348191	1.00[AMR][1000 genomes]
rs348193	0.89[AMR][1000 genomes]
rs348197	1.00[AMR][1000 genomes]
rs348199	1.00[AMR][1000 genomes]
rs348200	1.00[AMR][1000 genomes]
rs348207	1.00[AMR][1000 genomes]
rs348208	1.00[AMR][1000 genomes]
rs348209	1.00[AMR][1000 genomes]
rs35264557	0.89[AMR][1000 genomes]
rs4581273	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs492669	0.89[AMR][1000 genomes]
rs4971058	0.89[AMR][1000 genomes]
rs512551	1.00[AMR][1000 genomes]
rs540380	1.00[AMR][1000 genomes]
rs568672	1.00[AMR][1000 genomes]
rs606755	1.00[AMR][1000 genomes]
rs607036	0.89[AMR][1000 genomes]
rs617232	0.89[AMR][1000 genomes]
rs6427290	0.96[AFR][1000 genomes]
rs6688399	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs670787	0.89[AMR][1000 genomes]
rs708607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs708609	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs708613	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8179457	1.00[AMR][1000 genomes]
rs822011	0.84[AFR][1000 genomes]
rs822013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822017	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822021	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822023	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822024	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822027	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822483	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822484	0.83[AFR][1000 genomes]
rs822485	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822487	0.94[AFR][1000 genomes]
rs822492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822496	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs822498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs822521	0.81[AFR][1000 genomes]
rs822522	1.00[AMR][1000 genomes]
rs866603	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427219	0.89[AMR][1000 genomes]
rs9427222	1.00[AMR][1000 genomes]
rs9427227	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9427229	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv872469	chr1:155743310-155810293	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1003170	chr1:155762204-155836564	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155720200-155803600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:155765200-155803800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:155765200-155813200	Weak transcription	Psoas Muscle	Psoas
4	chr1:155771400-155798400	Strong transcription	Fetal Muscle Leg	muscle
5	chr1:155782200-155800800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:155783600-155823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:155786800-155801600	Strong transcription	Fetal Stomach	stomach
8	chr1:155786800-155802400	Strong transcription	Fetal Intestine Small	intestine
9	chr1:155787600-155822000	Weak transcription	Esophagus	oesophagus
10	chr1:155789600-155822000	Weak transcription	Fetal Brain Male	brain
11	chr1:155790600-155813200	Weak transcription	Gastric	stomach
12	chr1:155791800-155814800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:155792200-155803600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:155792200-155803600	Weak transcription	Right Ventricle	heart
15	chr1:155792200-155803600	Weak transcription	Spleen	Spleen
16	chr1:155792200-155803800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:155792200-155804000	Weak transcription	Fetal Heart	heart
18	chr1:155792200-155814200	Weak transcription	Colonic Mucosa	Colon
19	chr1:155792200-155814800	Weak transcription	HMEC	breast
20	chr1:155792200-155822000	Weak transcription	Pancreas	Pancrea
21	chr1:155792200-155826000	Weak transcription	Stomach Mucosa	stomach
22	chr1:155792400-155800400	Weak transcription	A549	lung
23	chr1:155792400-155803600	Weak transcription	Ovary	ovary
24	chr1:155792400-155804200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:155792400-155806200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:155792400-155814800	Weak transcription	Colon Smooth Muscle	Colon
27	chr1:155792400-155826600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:155792600-155803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr1:155792600-155813000	Weak transcription	Brain Angular Gyrus	brain
30	chr1:155792600-155813800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr1:155792600-155822800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr1:155792800-155806200	Weak transcription	NHEK	skin
33	chr1:155793400-155814400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr1:155793400-155820200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr1:155793600-155814600	Weak transcription	HUVEC	blood vessel
36	chr1:155793800-155798600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:155793800-155813600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr1:155793800-155814600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr1:155793800-155815000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr1:155794000-155804200	Weak transcription	NHDF-Ad	bronchial
41	chr1:155794200-155802800	Weak transcription	K562	blood
42	chr1:155795000-155798800	Weak transcription	Fetal Kidney	kidney
43	chr1:155795000-155803800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr1:155795200-155802600	Weak transcription	GM12878-XiMat	blood
45	chr1:155795200-155803800	Weak transcription	HSMMtube	muscle
46	chr1:155795200-155815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr1:155795200-155817800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:155795400-155801400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr1:155796000-155813000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr1:155796000-155814600	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links