The 2.0 version of rSNPBase

Variant report

Variant rs12138803
Chromosome Location chr1:172348823-172348824
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172343600-172349600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr1:172343600-172352200 Weak transcription HSMM muscle
3 chr1:172343600-172359800 Weak transcription Brain Angular Gyrus brain
4 chr1:172344600-172349600 Weak transcription Brain Hippocampus Middle brain
5 chr1:172344800-172352400 Weak transcription Brain Anterior Caudate brain
6 chr1:172344800-172357800 Weak transcription Brain Inferior Temporal Lobe brain
7 chr1:172344800-172359000 Weak transcription Brain Cingulate Gyrus brain
8 chr1:172345600-172350200 Weak transcription HUES48 Cell Line embryonic stem cell
9 chr1:172345800-172349400 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr1:172345800-172351200 Weak transcription iPS-15b Cell Line embryonic stem cell
11 chr1:172345800-172352200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr1:172346200-172349000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:172346200-172349200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr1:172346400-172351000 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr1:172346600-172367400 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:172347400-172357600 Weak transcription Brain Substantia Nigra brain
17 chr1:172347600-172349600 Weak transcription Fetal Kidney kidney
18 chr1:172347600-172349600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:172347800-172349600 Enhancers Primary T helper cells PMA-I stimulated --
20 chr1:172348000-172350000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr1:172348000-172351200 Weak transcription NHDF-Ad bronchial
22 chr1:172348000-172351600 Weak transcription Ovary ovary
23 chr1:172348200-172349200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr1:172348200-172349400 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr1:172348200-172349600 Enhancers Primary T helper naive cells from peripheral blood blood
26 chr1:172348200-172351600 Enhancers Primary T helper cells fromperipheralblood blood
27 chr1:172348400-172349800 Enhancers Primary T helper naive cells fromperipheralblood blood
28 chr1:172348400-172350400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr1:172348600-172349400 Enhancers GM12878-XiMat blood
30 chr1:172348600-172349600 Enhancers Primary T cells from cord blood blood
31 chr1:172348600-172349800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
32 chr1:172348600-172350000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
33 chr1:172348600-172351800 Enhancers Primary B cells from peripheral blood blood
34 chr1:172348600-172353600 Enhancers Fetal Lung lung
35 chr1:172348800-172349600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
36 chr1:172348800-172349600 Enhancers Primary T killer memory cells from peripheral blood blood
37 chr1:172348800-172349800 Enhancers Primary B cells from cord blood blood
38 chr1:172348800-172350200 Enhancers Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015