Variant report

Variant	rs10911629
Chromosome Location	chr1:172321398-172321399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172319507..172323495-chr1:172324646..172327530,4	MCF-7	breast:
2	chr1:172305170..172307799-chr1:172321376..172323141,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10489284	0.84[CEU][hapmap]
rs10797978	0.84[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs10797984	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs10798029	1.00[ASN][1000 genomes]
rs10911603	0.84[CEU][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs10911624	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10911627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802410	1.00[CHB][hapmap]
rs12069167	1.00[CHB][hapmap]
rs12081260	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs12117159	0.82[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120829	1.00[ASN][1000 genomes]
rs12124608	1.00[ASN][1000 genomes]
rs12130929	1.00[ASN][1000 genomes]
rs12132562	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132925	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133952	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134640	1.00[ASN][1000 genomes]
rs12134818	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12134821	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137951	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138803	1.00[CHB][hapmap]
rs12140433	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142161	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143377	0.89[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143497	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143622	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844588	1.00[ASN][1000 genomes]
rs17368984	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4471302	0.84[CEU][hapmap]
rs59476820	1.00[ASN][1000 genomes]
rs61330781	1.00[ASN][1000 genomes]
rs73048544	1.00[ASN][1000 genomes]
rs9425562	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs9425625	1.00[CHB][hapmap]
rs990363	0.84[CEU][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172313400-172327000	Weak transcription	Aorta	Aorta
2	chr1:172319400-172322200	Enhancers	Fetal Lung	lung
3	chr1:172319600-172321600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:172319600-172322000	Enhancers	Fetal Stomach	stomach
5	chr1:172319600-172322200	Enhancers	HSMM	muscle
6	chr1:172319600-172322400	Enhancers	Fetal Kidney	kidney
7	chr1:172319800-172321400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:172319800-172321400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:172319800-172322000	Enhancers	HUVEC	blood vessel
10	chr1:172319800-172322400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:172320000-172321400	Enhancers	Brain Cingulate Gyrus	brain
12	chr1:172320000-172322400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:172320000-172322400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:172320000-172322400	Enhancers	HSMMtube	muscle
15	chr1:172320000-172322600	Enhancers	NHLF	lung
16	chr1:172320200-172322200	Enhancers	NH-A	brain
17	chr1:172320600-172321400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:172320600-172321400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:172320600-172321600	Enhancers	Fetal Heart	heart
20	chr1:172320600-172322200	Flanking Active TSS	A549	lung
21	chr1:172320600-172322400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:172320600-172322400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:172320600-172322400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:172320600-172322400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr1:172320600-172322400	Enhancers	HMEC	breast
26	chr1:172320600-172322600	Enhancers	Fetal Muscle Leg	muscle
27	chr1:172320800-172321400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:172320800-172321400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:172320800-172321400	Enhancers	Fetal Intestine Large	intestine
30	chr1:172320800-172321400	Enhancers	Ovary	ovary
31	chr1:172320800-172321400	Flanking Active TSS	Hela-S3	cervix
32	chr1:172320800-172321400	Flanking Active TSS	NHDF-Ad	bronchial
33	chr1:172320800-172322000	Enhancers	Stomach Mucosa	stomach
34	chr1:172320800-172322400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:172320800-172332800	Enhancers	Fetal Intestine Small	intestine
36	chr1:172321000-172321400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:172321000-172321400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:172321000-172321400	Enhancers	Colon Smooth Muscle	Colon
39	chr1:172321000-172321400	Enhancers	Duodenum Mucosa	Duodenum
40	chr1:172321000-172321400	Enhancers	Rectal Smooth Muscle	rectum
41	chr1:172321000-172321400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr1:172321000-172321400	Enhancers	Small Intestine	intestine
43	chr1:172321000-172322000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr1:172321000-172322400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:172321200-172321800	Flanking Active TSS	NHEK	skin
46	chr1:172321200-172322200	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr1:172321200-172322400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr1:172321200-172322400	Enhancers	Osteobl	bone
49	chr1:172321200-172323400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr1:172321200-172324200	Enhancers	GM12878-XiMat	blood

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