Variant report

Variant	rs17368984
Chromosome Location	chr1:172318558-172318559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172318035..172320026-chr1:172322027..172324198,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10489284	0.84[CEU][hapmap]
rs10797978	0.84[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs10797984	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs10798029	1.00[ASN][1000 genomes]
rs10911603	0.84[CEU][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs10911624	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10911627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911629	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081260	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs12117159	0.82[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120829	1.00[ASN][1000 genomes]
rs12124608	1.00[ASN][1000 genomes]
rs12130929	1.00[ASN][1000 genomes]
rs12132562	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132925	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133952	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134640	1.00[ASN][1000 genomes]
rs12134818	1.00[ASN][1000 genomes]
rs12134821	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137951	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140433	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142161	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143377	0.89[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143497	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143622	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844588	1.00[ASN][1000 genomes]
rs4471302	0.84[CEU][hapmap]
rs59476820	1.00[ASN][1000 genomes]
rs61330781	1.00[ASN][1000 genomes]
rs73048544	1.00[ASN][1000 genomes]
rs9425562	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs990363	0.84[CEU][hapmap];0.85[GIH][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172313400-172327000	Weak transcription	Aorta	Aorta
2	chr1:172313600-172321000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:172313800-172319200	Weak transcription	Hela-S3	cervix
4	chr1:172314000-172320000	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:172314600-172319400	Weak transcription	Fetal Lung	lung
6	chr1:172314800-172319800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:172315000-172319800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:172316800-172319600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:172317000-172320600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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