Variant report

Variant	rs10911603
Chromosome Location	chr1:172303509-172303510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10489284	0.84[CEU][hapmap]
rs10797978	0.84[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797984	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798029	1.00[ASN][1000 genomes]
rs10911624	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911627	1.00[ASN][1000 genomes]
rs10911629	0.84[CEU][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs12081260	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117159	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12120829	1.00[ASN][1000 genomes]
rs12124608	1.00[ASN][1000 genomes]
rs12130929	1.00[ASN][1000 genomes]
rs12132562	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12132925	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12133952	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12134640	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134818	1.00[ASN][1000 genomes]
rs12134821	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12137951	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12140433	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs12141605	1.00[ASN][1000 genomes]
rs12142161	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs12143377	1.00[ASN][1000 genomes]
rs12143497	0.84[CEU][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs12143622	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs16844588	1.00[ASN][1000 genomes]
rs17368984	0.84[CEU][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs4471302	0.84[CEU][hapmap]
rs59469921	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59476820	1.00[ASN][1000 genomes]
rs61330781	1.00[ASN][1000 genomes]
rs73048544	1.00[ASN][1000 genomes]
rs9425562	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990363	1.00[CEU][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172275200-172309800	Weak transcription	Left Ventricle	heart
2	chr1:172292800-172303600	Weak transcription	Aorta	Aorta
3	chr1:172295000-172307400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:172303400-172303600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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