Variant report

Variant	rs12132562
Chromosome Location	chr1:172353471-172353472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172352695..172354230-chr1:172354543..172357309,2	K562	blood:
2	chr1:172345198..172346938-chr1:172350887..172353536,2	K562	blood:
3	chr1:172348336..172351497-chr1:172353137..172356177,3	K562	blood:
4	chr1:172352277..172354230-chr1:172354543..172356133,2	K562	blood:

Variant related genes	Relation type
ENSG00000135845	Chromatin interaction
ENSG00000197959	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10489284	0.84[CEU][hapmap]
rs10797978	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs10797984	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs10798029	1.00[ASN][1000 genomes]
rs10911603	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs10911624	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10911627	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911629	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081260	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs12117159	1.00[CEU][hapmap];0.82[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120829	1.00[ASN][1000 genomes]
rs12124608	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130929	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132925	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133952	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134640	1.00[ASN][1000 genomes]
rs12134818	1.00[ASN][1000 genomes]
rs12134821	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137951	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12140433	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141605	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142161	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12143377	0.89[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143497	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143622	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844588	1.00[ASN][1000 genomes]
rs17368984	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4471302	0.84[CEU][hapmap]
rs59476820	1.00[ASN][1000 genomes]
rs61330781	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684850	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73048544	1.00[ASN][1000 genomes]
rs74126214	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9425562	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs990363	0.84[CEU][hapmap];0.85[MEX][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172343600-172359800	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172344800-172357800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:172344800-172359000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:172346600-172367400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:172347400-172357600	Weak transcription	Brain Substantia Nigra	brain
6	chr1:172348600-172353600	Enhancers	Fetal Lung	lung
7	chr1:172349600-172353600	Enhancers	Fetal Stomach	stomach
8	chr1:172349600-172353800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:172349600-172356400	Enhancers	Fetal Kidney	kidney
10	chr1:172349600-172362000	Weak transcription	Left Ventricle	heart
11	chr1:172349800-172353600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:172349800-172353800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:172349800-172353800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:172349800-172363400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:172350000-172354000	Enhancers	Fetal Muscle Leg	muscle
16	chr1:172350200-172353800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr1:172350400-172353800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:172350400-172354400	Weak transcription	Thymus	Thymus
19	chr1:172350400-172357600	Weak transcription	Brain Hippocampus Middle	brain
20	chr1:172350400-172359400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr1:172350400-172362400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr1:172350400-172362600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr1:172350800-172354200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr1:172351000-172353600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:172351000-172353600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr1:172351000-172354000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr1:172351200-172354000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr1:172351200-172354200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr1:172351400-172353800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr1:172351400-172353800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:172351400-172354000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr1:172351400-172356800	Weak transcription	Fetal Intestine Small	intestine
33	chr1:172351400-172357800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:172351400-172363000	Weak transcription	A549	lung
35	chr1:172351600-172353800	Enhancers	Fetal Heart	heart
36	chr1:172351800-172354200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:172351800-172359400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr1:172351800-172363400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr1:172352000-172353600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:172352000-172353800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr1:172352000-172353800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr1:172352000-172353800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr1:172352000-172353800	Enhancers	NH-A	brain
44	chr1:172352200-172353600	Enhancers	HSMM	muscle
45	chr1:172352200-172353800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:172352200-172353800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:172352200-172359400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr1:172352200-172360000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:172352200-172363200	Weak transcription	Fetal Intestine Large	intestine
50	chr1:172352400-172353600	Enhancers	NHLF	lung

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