Variant report

Variant	rs10797978
Chromosome Location	chr1:172311679-172311680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172305536..172310300-chr1:172311582..172315417,5	K562	blood:
2	chr1:172305176..172306846-chr1:172309311..172312069,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10489284	0.84[CEU][hapmap]
rs10797984	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798029	1.00[ASN][1000 genomes]
rs10911603	0.84[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911624	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911627	1.00[ASN][1000 genomes]
rs10911629	0.84[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs12081260	1.00[CEU][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117159	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12120829	1.00[ASN][1000 genomes]
rs12124608	1.00[ASN][1000 genomes]
rs12130929	1.00[ASN][1000 genomes]
rs12132562	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12132925	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12133952	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12134640	0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134818	1.00[ASN][1000 genomes]
rs12134821	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12137951	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs12140433	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs12141605	1.00[ASN][1000 genomes]
rs12142161	0.84[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap]
rs12143377	1.00[ASN][1000 genomes]
rs12143497	0.84[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs12143622	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs16844588	1.00[ASN][1000 genomes]
rs17368984	0.84[CEU][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs4471302	0.84[CEU][hapmap]
rs59469921	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59476820	1.00[ASN][1000 genomes]
rs61330781	1.00[ASN][1000 genomes]
rs73048544	1.00[ASN][1000 genomes]
rs9425562	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990363	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172304000-172312200	Weak transcription	Aorta	Aorta
2	chr1:172307600-172312600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:172307800-172312200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:172307800-172312200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:172308000-172311800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:172308000-172312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:172308000-172312000	Weak transcription	A549	lung
8	chr1:172308000-172312200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:172308000-172312200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:172308000-172312400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:172308000-172313200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr1:172309200-172313800	Enhancers	Primary B cells from peripheral blood	blood
13	chr1:172310400-172311800	Weak transcription	Brain Substantia Nigra	brain
14	chr1:172310600-172313800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr1:172310800-172313600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:172311000-172313200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:172311000-172313600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr1:172311200-172312200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:172311200-172312600	Enhancers	Brain Anterior Caudate	brain
20	chr1:172311200-172312800	Enhancers	NHDF-Ad	bronchial
21	chr1:172311200-172313200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:172311200-172313400	Enhancers	Brain Hippocampus Middle	brain
23	chr1:172311200-172314800	Enhancers	Fetal Kidney	kidney
24	chr1:172311400-172312200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:172311400-172312200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:172311400-172312600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr1:172311400-172312600	Enhancers	HUVEC	blood vessel
28	chr1:172311400-172312800	Enhancers	Brain Cingulate Gyrus	brain
29	chr1:172311400-172313000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr1:172311400-172313000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:172311400-172313800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr1:172311600-172311800	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr1:172311600-172312000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:172311600-172312000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:172311600-172312000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:172311600-172312000	Active TSS	GM12878-XiMat	blood
37	chr1:172311600-172312200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr1:172311600-172312400	Enhancers	NH-A	brain
39	chr1:172311600-172312600	Enhancers	NHEK	skin
40	chr1:172311600-172312600	Enhancers	Osteobl	bone
41	chr1:172311600-172312800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr1:172311600-172312800	Enhancers	Primary B cells from cord blood	blood
43	chr1:172311600-172312800	Enhancers	Fetal Lung	lung
44	chr1:172311600-172313400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:172311600-172313400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr1:172311600-172313400	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr1:172311600-172313400	Enhancers	Brain Angular Gyrus	brain
48	chr1:172311600-172313600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:172311600-172313600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:172311600-172313600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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