The 2.0 version of rSNPBase

Variant report

Variant rs12143622
Chromosome Location chr1:172321632-172321633
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172313400-172327000 Weak transcription Aorta Aorta
2 chr1:172319400-172322200 Enhancers Fetal Lung lung
3 chr1:172319600-172322000 Enhancers Fetal Stomach stomach
4 chr1:172319600-172322200 Enhancers HSMM muscle
5 chr1:172319600-172322400 Enhancers Fetal Kidney kidney
6 chr1:172319800-172322000 Enhancers HUVEC blood vessel
7 chr1:172319800-172322400 Enhancers Muscle Satellite Cultured Cells --
8 chr1:172320000-172322400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:172320000-172322400 Enhancers Placenta Amnion Placenta Amnion
10 chr1:172320000-172322400 Enhancers HSMMtube muscle
11 chr1:172320000-172322600 Enhancers NHLF lung
12 chr1:172320200-172322200 Enhancers NH-A brain
13 chr1:172320600-172322200 Flanking Active TSS A549 lung
14 chr1:172320600-172322400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:172320600-172322400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:172320600-172322400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:172320600-172322400 Enhancers Sigmoid Colon Sigmoid Colon
18 chr1:172320600-172322400 Enhancers HMEC breast
19 chr1:172320600-172322600 Enhancers Fetal Muscle Leg muscle
20 chr1:172320800-172322000 Enhancers Stomach Mucosa stomach
21 chr1:172320800-172322400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:172320800-172332800 Enhancers Fetal Intestine Small intestine
23 chr1:172321000-172322000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:172321000-172322400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:172321200-172321800 Flanking Active TSS NHEK skin
26 chr1:172321200-172322200 Enhancers Primary T helper cells PMA-I stimulated --
27 chr1:172321200-172322400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:172321200-172322400 Enhancers Osteobl bone
29 chr1:172321200-172323400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr1:172321200-172324200 Enhancers GM12878-XiMat blood
31 chr1:172321200-172325000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
32 chr1:172321200-172325000 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr1:172321200-172326400 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr1:172321200-172327000 Weak transcription Brain Inferior Temporal Lobe brain
35 chr1:172321200-172327200 Weak transcription Right Atrium heart
36 chr1:172321200-172329600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:172321400-172322000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:172321400-172322000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:172321400-172322000 Enhancers NHDF-Ad bronchial
40 chr1:172321400-172322200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr1:172321400-172322200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:172321400-172322200 Enhancers Primary T helper naive cells from peripheral blood blood
43 chr1:172321400-172322400 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:172321400-172322600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
45 chr1:172321400-172323000 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr1:172321400-172323000 Weak transcription Fetal Intestine Large intestine
47 chr1:172321400-172324000 Weak transcription Colon Smooth Muscle Colon
48 chr1:172321400-172324200 Enhancers Hela-S3 cervix
49 chr1:172321400-172325000 Weak transcription Rectal Smooth Muscle rectum
50 chr1:172321400-172325200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015