The 2.0 version of rSNPBase

Variant report

Variant rs10911627
Chromosome Location chr1:172320969-172320970
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172313400-172327000 Weak transcription Aorta Aorta
2 chr1:172313600-172321000 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr1:172319400-172321200 Enhancers Brain Hippocampus Middle brain
4 chr1:172319400-172322200 Enhancers Fetal Lung lung
5 chr1:172319600-172321600 Enhancers Cortex derived primary cultured neurospheres brain
6 chr1:172319600-172322000 Enhancers Fetal Stomach stomach
7 chr1:172319600-172322200 Enhancers HSMM muscle
8 chr1:172319600-172322400 Enhancers Fetal Kidney kidney
9 chr1:172319800-172321000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:172319800-172321400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
11 chr1:172319800-172321400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:172319800-172322000 Enhancers HUVEC blood vessel
13 chr1:172319800-172322400 Enhancers Muscle Satellite Cultured Cells --
14 chr1:172320000-172321000 Weak transcription Rectal Smooth Muscle rectum
15 chr1:172320000-172321200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:172320000-172321400 Enhancers Brain Cingulate Gyrus brain
17 chr1:172320000-172322400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr1:172320000-172322400 Enhancers Placenta Amnion Placenta Amnion
19 chr1:172320000-172322400 Enhancers HSMMtube muscle
20 chr1:172320000-172322600 Enhancers NHLF lung
21 chr1:172320200-172321000 Weak transcription Colon Smooth Muscle Colon
22 chr1:172320200-172321200 Enhancers Brain Substantia Nigra brain
23 chr1:172320200-172322200 Enhancers NH-A brain
24 chr1:172320600-172321200 Enhancers Adipose Nuclei Adipose
25 chr1:172320600-172321200 Enhancers Duodenum Smooth Muscle Duodenum
26 chr1:172320600-172321200 Enhancers NHEK skin
27 chr1:172320600-172321400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
28 chr1:172320600-172321400 Enhancers Fetal Adrenal Gland Adrenal Gland
29 chr1:172320600-172321600 Enhancers Fetal Heart heart
30 chr1:172320600-172322200 Flanking Active TSS A549 lung
31 chr1:172320600-172322400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:172320600-172322400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
33 chr1:172320600-172322400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr1:172320600-172322400 Enhancers Sigmoid Colon Sigmoid Colon
35 chr1:172320600-172322400 Enhancers HMEC breast
36 chr1:172320600-172322600 Enhancers Fetal Muscle Leg muscle
37 chr1:172320800-172321000 Weak transcription Right Atrium heart
38 chr1:172320800-172321000 Enhancers Osteobl bone
39 chr1:172320800-172321200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr1:172320800-172321200 Enhancers Brain Anterior Caudate brain
41 chr1:172320800-172321200 Enhancers Brain Inferior Temporal Lobe brain
42 chr1:172320800-172321200 Enhancers Rectal Mucosa Donor 29 rectum
43 chr1:172320800-172321400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:172320800-172321400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:172320800-172321400 Enhancers Fetal Intestine Large intestine
46 chr1:172320800-172321400 Enhancers Ovary ovary
47 chr1:172320800-172321400 Flanking Active TSS Hela-S3 cervix
48 chr1:172320800-172321400 Flanking Active TSS NHDF-Ad bronchial
49 chr1:172320800-172322000 Enhancers Stomach Mucosa stomach
50 chr1:172320800-172322400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015