Variant report

Variant	rs12124608
Chromosome Location	chr1:172345336-172345337
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172345198..172346938-chr1:172350887..172353536,2	K562	blood:
2	chr1:172340218..172342469-chr1:172343323..172345336,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIGC-2	chr1:172345271-172345570	NONHSAT007610

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10797978	1.00[ASN][1000 genomes]
rs10797984	1.00[ASN][1000 genomes]
rs10798029	1.00[ASN][1000 genomes]
rs10911603	1.00[ASN][1000 genomes]
rs10911624	1.00[ASN][1000 genomes]
rs10911627	1.00[ASN][1000 genomes]
rs10911629	1.00[ASN][1000 genomes]
rs12081260	1.00[ASN][1000 genomes]
rs12117159	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12120829	1.00[ASN][1000 genomes]
rs12130929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132562	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132925	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133952	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134640	1.00[ASN][1000 genomes]
rs12134818	1.00[ASN][1000 genomes]
rs12134821	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137951	1.00[ASN][1000 genomes]
rs12140433	1.00[ASN][1000 genomes]
rs12141605	1.00[ASN][1000 genomes]
rs12143377	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12143497	1.00[ASN][1000 genomes]
rs12143622	1.00[ASN][1000 genomes]
rs16844588	1.00[ASN][1000 genomes]
rs17368984	1.00[ASN][1000 genomes]
rs59476820	1.00[ASN][1000 genomes]
rs61330781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73048544	1.00[ASN][1000 genomes]
rs74126214	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9425562	1.00[ASN][1000 genomes]
rs990363	1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172331200-172347200	Weak transcription	Fetal Kidney	kidney
2	chr1:172339200-172345600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:172343400-172345400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:172343400-172346200	Enhancers	Primary T cells from cord blood	blood
5	chr1:172343600-172345600	Weak transcription	NHEK	skin
6	chr1:172343600-172349600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:172343600-172352200	Weak transcription	HSMM	muscle
8	chr1:172343600-172359800	Weak transcription	Brain Angular Gyrus	brain
9	chr1:172344000-172346200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:172344400-172345600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:172344400-172345800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:172344400-172346200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:172344400-172346400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr1:172344600-172345600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:172344600-172345600	Weak transcription	HMEC	breast
16	chr1:172344600-172346200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:172344600-172348800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr1:172344600-172349600	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:172344800-172347000	Weak transcription	Brain Substantia Nigra	brain
20	chr1:172344800-172352400	Weak transcription	Brain Anterior Caudate	brain
21	chr1:172344800-172357800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr1:172344800-172359000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:172345200-172345800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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