Variant report

Variant	rs74126214
Chromosome Location	chr1:172360036-172360037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12117159	0.87[AMR][1000 genomes]
rs12124608	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12130929	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12132562	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12132925	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12133952	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12134821	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12143377	0.87[AMR][1000 genomes]
rs61330781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6684850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172346600-172367400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:172349600-172362000	Weak transcription	Left Ventricle	heart
3	chr1:172349800-172363400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:172350400-172362400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr1:172350400-172362600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:172351400-172363000	Weak transcription	A549	lung
7	chr1:172351800-172363400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:172352200-172363200	Weak transcription	Fetal Intestine Large	intestine
9	chr1:172352400-172386400	Weak transcription	Psoas Muscle	Psoas
10	chr1:172353000-172362600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:172353600-172366400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:172354600-172364000	Weak transcription	Fetal Brain Female	brain
13	chr1:172355000-172363800	Weak transcription	Lung	lung
14	chr1:172355600-172364000	Weak transcription	Fetal Brain Male	brain
15	chr1:172356600-172367400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:172358800-172361400	Enhancers	Fetal Muscle Leg	muscle
17	chr1:172359000-172360400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:172359000-172360400	Enhancers	Brain Cingulate Gyrus	brain
19	chr1:172359000-172360400	Enhancers	Fetal Heart	heart
20	chr1:172359000-172361000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:172359000-172361000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr1:172359200-172360400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:172359200-172360600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr1:172359200-172360800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr1:172359200-172360800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr1:172359400-172360200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:172359400-172360200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr1:172359400-172360200	Genic enhancers	Brain Inferior Temporal Lobe	brain
29	chr1:172359400-172360200	Enhancers	Esophagus	oesophagus
30	chr1:172359400-172360200	Flanking Active TSS	Fetal Kidney	kidney
31	chr1:172359400-172360200	Enhancers	Fetal Lung	lung
32	chr1:172359400-172360200	Enhancers	Placenta	Placenta
33	chr1:172359400-172360200	Enhancers	Gastric	stomach
34	chr1:172359400-172360200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr1:172359400-172360200	Enhancers	Spleen	Spleen
36	chr1:172359400-172360200	Enhancers	HSMM	muscle
37	chr1:172359400-172360400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:172359400-172360400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:172359400-172360400	Enhancers	Fetal Thymus	thymus
40	chr1:172359400-172360400	Enhancers	Ovary	ovary
41	chr1:172359400-172360400	Enhancers	Rectal Smooth Muscle	rectum
42	chr1:172359400-172360400	Enhancers	Right Atrium	heart
43	chr1:172359400-172360400	Flanking Active TSS	GM12878-XiMat	blood
44	chr1:172359400-172360600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr1:172359400-172360600	Enhancers	Fetal Muscle Trunk	muscle
46	chr1:172359400-172360800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr1:172359400-172360800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr1:172359400-172360800	Enhancers	HUVEC	blood vessel
49	chr1:172359400-172361000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr1:172359400-172361000	Enhancers	Fetal Stomach	stomach

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