Variant report

Variant	rs12133952
Chromosome Location	chr1:172338724-172338725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172338428..172340589-chr1:172342597..172345096,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10489284	0.84[CEU][hapmap]
rs10797978	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs10797984	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs10798029	1.00[ASN][1000 genomes]
rs10911603	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs10911624	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10911627	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911629	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081260	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs12117159	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120829	1.00[ASN][1000 genomes]
rs12124608	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130929	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132562	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132925	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134640	1.00[ASN][1000 genomes]
rs12134818	1.00[ASN][1000 genomes]
rs12134821	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137951	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12140433	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141605	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142161	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12143377	0.89[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143497	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143622	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844588	1.00[ASN][1000 genomes]
rs17368984	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4471302	0.84[CEU][hapmap]
rs59476820	1.00[ASN][1000 genomes]
rs61330781	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684850	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73048544	1.00[ASN][1000 genomes]
rs74126214	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9425562	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs990363	0.84[CEU][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172330400-172343000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172331200-172347200	Weak transcription	Fetal Kidney	kidney
3	chr1:172338600-172343000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links