Variant report

Variant	rs12140650
Chromosome Location	chr1:210549296-210549297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210497683..210507034-chr1:210544536..210549319,22	MCF-7	breast:
2	chr1:210548070..210550823-chr1:211662060..211664424,2	K562	blood:
3	chr1:210543442..210549646-chr1:211430130..211435518,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction
ENSG00000054392	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12729428	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2273009	0.91[ASN][1000 genomes]
rs2357583	0.83[ASN][1000 genomes]
rs3765872	0.83[ASN][1000 genomes]
rs60935759	0.81[ASN][1000 genomes]
rs6656628	0.83[ASN][1000 genomes]
rs6656669	0.88[ASN][1000 genomes]
rs6672972	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6690120	0.88[ASN][1000 genomes]
rs7355019	1.00[ASN][1000 genomes]
rs7355031	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs742560	1.00[ASN][1000 genomes]
rs7530104	1.00[ASN][1000 genomes]
rs7550554	1.00[ASN][1000 genomes]
rs761171	1.00[ASN][1000 genomes]
rs926582	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8769	chr1:210403509-210564588	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210536800-210551000	Weak transcription	Right Ventricle	heart
3	chr1:210536800-210558800	Weak transcription	Fetal Stomach	stomach
4	chr1:210537000-210550600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:210538400-210565600	Weak transcription	Esophagus	oesophagus
6	chr1:210540800-210549600	Weak transcription	HSMMtube	muscle
7	chr1:210541000-210550000	Weak transcription	Brain Anterior Caudate	brain
8	chr1:210543200-210549800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:210543200-210555800	Weak transcription	Right Atrium	heart
10	chr1:210543200-210565200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:210543400-210551000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:210546000-210550200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:210546600-210566200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:210547200-210549800	Weak transcription	NHLF	lung
15	chr1:210547200-210550000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:210547200-210550000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:210547200-210550400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:210547200-210550800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr1:210547400-210549600	Enhancers	Liver	Liver
20	chr1:210547400-210549800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:210547600-210555200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:210547800-210550200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:210548000-210549800	Enhancers	HSMM	muscle
24	chr1:210548000-210551000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:210548200-210550800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr1:210548400-210549800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:210548400-210550000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:210548400-210550000	Weak transcription	NH-A	brain
29	chr1:210548400-210550800	Weak transcription	HMEC	breast
30	chr1:210548600-210549600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:210548600-210550200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:210548600-210556000	Weak transcription	HepG2	liver
33	chr1:210548600-210566400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:210548800-210549800	Weak transcription	NHDF-Ad	bronchial
35	chr1:210548800-210550000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:210549000-210551000	Weak transcription	A549	lung
37	chr1:210549200-210549600	Weak transcription	Osteobl	bone

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