Variant report

Variant	rs926582
Chromosome Location	chr1:210568575-210568576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210545087..210549192-chr1:210563139..210569683,17	K562	blood:
3	chr1:210566042..210569012-chr1:210569613..210571239,2	MCF-7	breast:
4	chr1:210557280..210560870-chr1:210565323..210568970,3	MCF-7	breast:
5	chr1:210544272..210548756-chr1:210564899..210569569,12	MCF-7	breast:
6	chr1:210566055..210568677-chr1:210572512..210575312,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12140650	0.88[ASN][1000 genomes]
rs2273009	0.93[ASN][1000 genomes]
rs61826890	0.84[EUR][1000 genomes]
rs6656669	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666446	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6672972	0.85[ASN][1000 genomes]
rs6677509	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6690120	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7354957	0.82[EUR][1000 genomes]
rs7355019	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs742560	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7530104	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7550554	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs761171	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210563400-210569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:210565200-210569600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:210566000-210569000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:210566200-210568800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:210566200-210569000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:210566200-210569000	Enhancers	Brain Angular Gyrus	brain
10	chr1:210566200-210569000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr1:210566200-210569400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:210566200-210569400	Enhancers	HMEC	breast
13	chr1:210566400-210568800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:210566400-210568800	Enhancers	Osteobl	bone
15	chr1:210566400-210569000	Enhancers	Brain Cingulate Gyrus	brain
16	chr1:210566400-210569000	Enhancers	NHDF-Ad	bronchial
17	chr1:210566400-210569200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:210566400-210569200	Enhancers	HepG2	liver
19	chr1:210566600-210568800	Enhancers	NH-A	brain
20	chr1:210566800-210586200	Weak transcription	Lung	lung
21	chr1:210567000-210569000	Enhancers	Brain Substantia Nigra	brain
22	chr1:210567200-210570000	Weak transcription	Fetal Brain Male	brain
23	chr1:210567400-210568800	Enhancers	Brain Anterior Caudate	brain
24	chr1:210567400-210568800	Enhancers	Brain Hippocampus Middle	brain
25	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
26	chr1:210567600-210569200	Enhancers	HSMM	muscle
27	chr1:210567800-210568600	Weak transcription	Fetal Brain Female	brain
28	chr1:210568000-210570600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:210568000-210571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:210568000-210571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:210568200-210570000	Weak transcription	HSMMtube	muscle
32	chr1:210568200-210571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:210568200-210571000	Weak transcription	NHLF	lung
34	chr1:210568200-210572600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr1:210568200-210573800	Weak transcription	Aorta	Aorta
36	chr1:210568400-210570600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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