Variant report

Variant	rs6656669
Chromosome Location	chr1:210569235-210569236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210545087..210549192-chr1:210563139..210569683,17	K562	blood:
3	chr1:210544272..210548756-chr1:210564899..210569569,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489388	0.84[CEU][hapmap]
rs12140650	0.88[ASN][1000 genomes]
rs17016026	0.84[CEU][hapmap]
rs17759021	0.84[CEU][hapmap]
rs2273009	0.89[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs3765879	0.84[CEU][hapmap]
rs60935759	0.84[AMR][1000 genomes]
rs61826890	0.84[EUR][1000 genomes]
rs6540589	0.83[CEU][hapmap]
rs6666446	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6672972	0.85[ASN][1000 genomes]
rs6677509	0.89[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6690120	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7354957	0.82[EUR][1000 genomes]
rs7355019	0.89[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs742560	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7527939	0.83[CEU][hapmap]
rs7530104	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7550554	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs761171	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs926582	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210563400-210569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:210565200-210569600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:210566200-210569400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:210566200-210569400	Enhancers	HMEC	breast
8	chr1:210566800-210586200	Weak transcription	Lung	lung
9	chr1:210567200-210570000	Weak transcription	Fetal Brain Male	brain
10	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
11	chr1:210568000-210570600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:210568000-210571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:210568000-210571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:210568200-210570000	Weak transcription	HSMMtube	muscle
15	chr1:210568200-210571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:210568200-210571000	Weak transcription	NHLF	lung
17	chr1:210568200-210572600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr1:210568200-210573800	Weak transcription	Aorta	Aorta
19	chr1:210568400-210570600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:210568600-210570000	Weak transcription	Fetal Lung	lung
21	chr1:210568800-210571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:210568800-210573800	Weak transcription	Osteobl	bone
23	chr1:210569000-210570200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr1:210569200-210569400	Enhancers	Right Ventricle	heart
25	chr1:210569200-210570600	Weak transcription	HSMM	muscle
26	chr1:210569200-210573600	Weak transcription	HepG2	liver

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