The 2.0 version of rSNPBase

Variant report

Variant rs12141278
Chromosome Location chr1:172116798-172116799
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172113800-172117800 Weak transcription ES-I3 Cell Line embryonic stem cell
2 chr1:172114400-172137000 Weak transcription Brain Angular Gyrus brain
3 chr1:172114800-172117800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:172114800-172117800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr1:172114800-172118200 Enhancers NHEK skin
6 chr1:172114800-172123600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr1:172115000-172117600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr1:172115000-172118000 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr1:172115000-172119600 Weak transcription Ovary ovary
10 chr1:172115000-172119800 Weak transcription Fetal Muscle Leg muscle
11 chr1:172115000-172123400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr1:172115000-172123600 Weak transcription Adipose Nuclei Adipose
13 chr1:172115000-172133800 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr1:172115200-172116800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:172115200-172117400 Weak transcription Rectal Smooth Muscle rectum
16 chr1:172115200-172117800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:172115200-172117800 Enhancers Osteobl bone
18 chr1:172115200-172118000 Weak transcription Colon Smooth Muscle Colon
19 chr1:172115200-172118800 Enhancers NHDF-Ad bronchial
20 chr1:172115200-172119200 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr1:172115200-172119400 Weak transcription HUES48 Cell Line embryonic stem cell
22 chr1:172115400-172117800 Weak transcription HUES64 Cell Line embryonic stem cell
23 chr1:172115400-172118000 Enhancers HMEC breast
24 chr1:172115400-172119200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:172115600-172117600 Weak transcription HUVEC blood vessel
26 chr1:172115600-172117800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:172115600-172132600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:172115800-172117200 Weak transcription Fetal Kidney kidney
29 chr1:172115800-172117600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr1:172116000-172116800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:172116000-172123400 Weak transcription NH-A brain
32 chr1:172116200-172117800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:172116200-172117800 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr1:172116400-172117600 Weak transcription Fetal Stomach stomach
35 chr1:172116400-172123200 Weak transcription Muscle Satellite Cultured Cells --
36 chr1:172116600-172116800 Enhancers Stomach Mucosa stomach
37 chr1:172116600-172117600 Weak transcription Fetal Lung lung
38 chr1:172116600-172117800 Weak transcription NHLF lung

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Last update: Aug 31, 2015