Variant report

Variant	rs59123063
Chromosome Location	chr1:172126961-172126962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172125671..172128469-chr1:172129560..172132030,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10442603	0.82[AMR][1000 genomes]
rs10797791	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911101	0.88[AMR][1000 genomes]
rs10911110	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10911111	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10911112	0.81[EUR][1000 genomes]
rs10911116	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911121	0.98[EUR][1000 genomes]
rs10911122	0.98[EUR][1000 genomes]
rs10911123	0.99[EUR][1000 genomes]
rs10911124	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117047	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12139213	0.91[ASN][1000 genomes]
rs12141278	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12561946	0.82[ASN][1000 genomes]
rs1475230	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1475231	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146901	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2181624	0.81[EUR][1000 genomes]
rs2421987	0.81[AMR][1000 genomes]
rs35419194	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56848769	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543724	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61046549	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172114400-172137000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172115000-172133800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:172115600-172132600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:172123400-172149200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:172125200-172127600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:172125200-172137800	Weak transcription	Fetal Kidney	kidney
7	chr1:172125600-172130800	Weak transcription	Fetal Lung	lung
8	chr1:172125600-172132400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:172125600-172137400	Weak transcription	NHLF	lung

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