Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172125671..172128469-chr1:172129560..172132030,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10797791	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911110	0.91[ASN][1000 genomes]
rs10911111	0.91[ASN][1000 genomes]
rs10911112	0.81[EUR][1000 genomes]
rs10911116	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911121	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10911122	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10911123	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10911124	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10911125	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12117047	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12139213	0.90[ASN][1000 genomes]
rs12141278	0.91[ASN][1000 genomes]
rs12561946	0.83[ASN][1000 genomes]
rs1475230	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1475231	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2146901	0.91[ASN][1000 genomes]
rs2181624	0.81[EUR][1000 genomes]
rs35419194	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56848769	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59123063	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61046549	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72719086	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172114400-172137000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172115000-172133800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:172115600-172132600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:172123400-172149200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:172125200-172137800	Weak transcription	Fetal Kidney	kidney
6	chr1:172125600-172132400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:172125600-172137400	Weak transcription	NHLF	lung
8	chr1:172128400-172149800	Weak transcription	Aorta	Aorta
9	chr1:172130400-172132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:172130600-172131000	Enhancers	Fetal Stomach	stomach
11	chr1:172130800-172131800	Enhancers	Fetal Lung	lung
12	chr1:172130800-172132200	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search: