The 2.0 version of rSNPBase

Variant report

Variant rs12142220
Chromosome Location chr1:84662217-84662218
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84640400-84665000 Weak transcription NH-A brain
2 chr1:84646400-84662600 Weak transcription Colonic Mucosa Colon
3 chr1:84650600-84662400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr1:84652200-84675000 Weak transcription Pancreas Pancrea
5 chr1:84652400-84689800 Weak transcription Aorta Aorta
6 chr1:84653400-84674800 Weak transcription Placenta Amnion Placenta Amnion
7 chr1:84657200-84665400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
8 chr1:84657400-84662400 Weak transcription HSMM muscle
9 chr1:84657400-84664800 Weak transcription Brain Angular Gyrus brain
10 chr1:84657400-84665000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr1:84657600-84708000 Weak transcription Left Ventricle heart
12 chr1:84657800-84665400 Strong transcription Primary T regulatory cells fromperipheralblood blood
13 chr1:84658400-84667600 Weak transcription NHDF-Ad bronchial
14 chr1:84658600-84665200 Weak transcription Muscle Satellite Cultured Cells --
15 chr1:84659000-84662400 Weak transcription Brain Hippocampus Middle brain
16 chr1:84659000-84662400 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:84659000-84663800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:84659000-84666600 Weak transcription H1 Cell Line embryonic stem cell
19 chr1:84659000-84672000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:84659000-84674600 Weak transcription Osteobl bone
21 chr1:84659000-84685000 Weak transcription Rectal Smooth Muscle rectum
22 chr1:84659000-84700600 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr1:84659000-84700800 Weak transcription Colon Smooth Muscle Colon
24 chr1:84659200-84662800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:84659200-84677000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
26 chr1:84659200-84688400 Weak transcription iPS-20b Cell Line embryonic stem cell
27 chr1:84659400-84662800 Weak transcription Brain Anterior Caudate brain
28 chr1:84659400-84663000 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr1:84659400-84663400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:84659400-84663600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:84659400-84666400 Strong transcription Primary T cells fromperipheralblood blood
32 chr1:84659400-84666600 Strong transcription Primary B cells from peripheral blood blood
33 chr1:84659400-84668000 Strong transcription Fetal Thymus thymus
34 chr1:84659400-84670400 Strong transcription Primary T helper cells fromperipheralblood blood
35 chr1:84659400-84672000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:84659400-84675200 Strong transcription Dnd41 blood
37 chr1:84659400-84677200 Weak transcription Psoas Muscle Psoas
38 chr1:84659400-84685400 Weak transcription Stomach Smooth Muscle stomach
39 chr1:84659600-84662400 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr1:84659600-84662800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr1:84659600-84663600 Weak transcription Primary T helper naive cells from peripheral blood blood
42 chr1:84659600-84665000 Strong transcription Primary B cells from cord blood blood
43 chr1:84659600-84665000 Strong transcription Primary hematopoietic stem cells short term culture blood
44 chr1:84659600-84665000 Weak transcription Fetal Muscle Trunk muscle
45 chr1:84659600-84665000 Weak transcription Fetal Muscle Leg muscle
46 chr1:84659600-84665600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr1:84659600-84672000 Weak transcription HMEC breast
48 chr1:84659600-84673600 Weak transcription Placenta Placenta
49 chr1:84659600-84675000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr1:84659800-84664600 Weak transcription Ovary ovary

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Last update: Aug 31, 2015