The 2.0 version of rSNPBase

Variant report

Variant rs12135562
Chromosome Location chr1:84689142-84689143
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84652400-84689800 Weak transcription Aorta Aorta
2 chr1:84657600-84708000 Weak transcription Left Ventricle heart
3 chr1:84659000-84700600 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr1:84659000-84700800 Weak transcription Colon Smooth Muscle Colon
5 chr1:84659800-84701400 Weak transcription NHLF lung
6 chr1:84665200-84700800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr1:84665400-84700600 Weak transcription Colonic Mucosa Colon
8 chr1:84665400-84701000 Weak transcription Fetal Kidney kidney
9 chr1:84666000-84689800 Weak transcription Fetal Stomach stomach
10 chr1:84666800-84710200 Weak transcription HSMMtube muscle
11 chr1:84668200-84690000 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr1:84672600-84689800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:84672600-84700600 Weak transcription Brain Anterior Caudate brain
14 chr1:84672600-84701000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:84672600-84711200 Weak transcription Brain Substantia Nigra brain
16 chr1:84673000-84689800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:84673000-84700600 Weak transcription HSMM muscle
18 chr1:84673200-84690000 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr1:84675200-84712800 Weak transcription NH-A brain
20 chr1:84675800-84705000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:84680200-84689600 Weak transcription Gastric stomach
22 chr1:84681800-84691800 Strong transcription Primary B cells from cord blood blood
23 chr1:84683600-84701000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:84683600-84701000 Weak transcription Ovary ovary
25 chr1:84684000-84701000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:84684600-84700800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:84685400-84689600 Weak transcription Thymus Thymus
28 chr1:84685400-84690800 Weak transcription Brain Inferior Temporal Lobe brain
29 chr1:84685400-84693800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr1:84685400-84700600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr1:84685400-84700600 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr1:84685400-84705400 Weak transcription HUVEC blood vessel
33 chr1:84685400-84705600 Weak transcription Brain Germinal Matrix brain
34 chr1:84685600-84689800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:84685600-84689800 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr1:84685600-84700600 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr1:84685600-84700800 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr1:84685600-84700800 Weak transcription Stomach Smooth Muscle stomach
39 chr1:84685600-84713400 Weak transcription Rectal Smooth Muscle rectum
40 chr1:84685800-84689600 Weak transcription Fetal Thymus thymus
41 chr1:84686200-84701000 Weak transcription Brain Cingulate Gyrus brain
42 chr1:84686600-84691200 Weak transcription Brain Hippocampus Middle brain
43 chr1:84686600-84692400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr1:84687600-84689200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
45 chr1:84687600-84689600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:84687600-84689800 Strong transcription Primary T helper naive cells fromperipheralblood blood
47 chr1:84687800-84689200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:84688200-84690400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
49 chr1:84688600-84689600 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr1:84688600-84689600 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015