Variant report

Variant	rs316689
Chromosome Location	chr1:84732644-84732645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1085093	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12125649	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12135562	1.00[ASN][1000 genomes]
rs12142220	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1246574	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs316636	1.00[ASN][1000 genomes]
rs316641	1.00[ASN][1000 genomes]
rs72942037	1.00[ASN][1000 genomes]
rs784828	1.00[CHB][hapmap]
rs784830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs784831	1.00[ASN][1000 genomes]
rs813056	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs868612	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830414	chr1:84636738-84824651	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv830426	chr1:84704924-84856229	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84727400-84734600	Weak transcription	A549	lung
2	chr1:84729000-84733000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:84731600-84733600	Enhancers	Stomach Mucosa	stomach
4	chr1:84732000-84733000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
5	chr1:84732000-84736200	Enhancers	Fetal Intestine Small	intestine
6	chr1:84732000-84739000	Enhancers	Fetal Intestine Large	intestine
7	chr1:84732200-84733200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
8	chr1:84732200-84733400	Enhancers	Duodenum Mucosa	Duodenum
9	chr1:84732400-84733800	Weak transcription	Small Intestine	intestine
10	chr1:84732400-84734600	Weak transcription	Fetal Kidney	kidney
11	chr1:84732600-84733200	Enhancers	Colonic Mucosa	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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