Variant report

Variant	rs12154982
Chromosome Location	chr7:78043990-78043991
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12216677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13244963	1.00[AFR][1000 genomes]
rs17344319	1.00[AFR][1000 genomes]
rs17371672	1.00[AFR][1000 genomes]
rs17404500	1.00[AFR][1000 genomes]
rs9649283	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:78029000-78045000	Weak transcription	Brain Anterior Caudate	brain
3	chr7:78029000-78045200	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78029600-78044400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78035400-78044800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:78036200-78047200	Weak transcription	Brain Angular Gyrus	brain
7	chr7:78041200-78047200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:78041800-78045200	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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