Variant report

Variant	rs9649283
Chromosome Location	chr7:77888562-77888563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12154982	1.00[AFR][1000 genomes]
rs12216677	1.00[AFR][1000 genomes]
rs17344319	1.00[AFR][1000 genomes]
rs17404500	1.00[AFR][1000 genomes]
rs62461209	1.00[AFR][1000 genomes]
rs62461231	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1034622	chr7:77579053-77958967	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv538984	chr7:77579053-77958967	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv532146	chr7:77612319-77958966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77876600-77894600	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:77882800-77889000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:77883600-77890000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:77883600-77890000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:77883600-77893800	Weak transcription	Fetal Brain Female	brain
6	chr7:77884000-77888600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:77884400-77893000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:77884400-77893200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:77885000-77895000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:77885600-77893600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:77885600-77894600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:77885600-77913000	Weak transcription	Ovary	ovary
13	chr7:77885800-77892800	Weak transcription	Aorta	Aorta
14	chr7:77885800-77896600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:77886000-77888800	Weak transcription	Brain Anterior Caudate	brain
16	chr7:77886000-77895200	Weak transcription	Brain Substantia Nigra	brain
17	chr7:77887600-77895000	Weak transcription	Brain Angular Gyrus	brain
18	chr7:77888400-77888600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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