Variant report

Variant	rs62461231
Chromosome Location	chr7:77761862-77761863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17344319	1.00[AFR][1000 genomes]
rs62461209	1.00[AFR][1000 genomes]
rs9649283	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1034622	chr7:77579053-77958967	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv538984	chr7:77579053-77958967	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv532146	chr7:77612319-77958966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77730000-77768600	Weak transcription	Aorta	Aorta
2	chr7:77742000-77768600	Weak transcription	Fetal Brain Female	brain
3	chr7:77744000-77763400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:77744400-77765400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:77753000-77764000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:77753600-77767600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:77754800-77764200	Weak transcription	Pancreas	Pancrea
8	chr7:77755200-77763600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:77755400-77768600	Weak transcription	NHLF	lung
10	chr7:77755600-77767400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:77755600-77768600	Weak transcription	Brain Anterior Caudate	brain
12	chr7:77758600-77767800	Weak transcription	Fetal Brain Male	brain
13	chr7:77758600-77783400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:77760200-77770800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:77760400-77762000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:77760400-77767400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:77760400-77771000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:77760600-77763200	Weak transcription	NHDF-Ad	bronchial
19	chr7:77760600-77763400	Weak transcription	HSMM	muscle
20	chr7:77760600-77763400	Weak transcription	HSMMtube	muscle
21	chr7:77760600-77763600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:77760600-77767400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:77760600-77768400	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:77760800-77768600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:77760800-77768600	Weak transcription	Brain Substantia Nigra	brain
26	chr7:77761000-77764200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:77761200-77762400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:77761400-77762000	Strong transcription	Brain Germinal Matrix	brain
29	chr7:77761400-77762000	Strong transcription	Stomach Smooth Muscle	stomach
30	chr7:77761600-77762400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:77761800-77762400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr7:77761800-77768600	Weak transcription	Ovary	ovary

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