Variant report

Variant	rs62461209
Chromosome Location	chr7:77748464-77748465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17344319	1.00[AFR][1000 genomes]
rs62461231	1.00[AFR][1000 genomes]
rs9649283	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1034622	chr7:77579053-77958967	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv538984	chr7:77579053-77958967	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv532146	chr7:77612319-77958966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77729800-77755800	Weak transcription	Ovary	ovary
2	chr7:77730000-77768600	Weak transcription	Aorta	Aorta
3	chr7:77741000-77754800	Weak transcription	Brain Angular Gyrus	brain
4	chr7:77741200-77758000	Weak transcription	Brain Germinal Matrix	brain
5	chr7:77741400-77753200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:77741800-77753400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:77741800-77754600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:77742000-77768600	Weak transcription	Fetal Brain Female	brain
9	chr7:77742400-77753400	Weak transcription	Brain Anterior Caudate	brain
10	chr7:77742400-77758200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:77744000-77763400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:77744400-77753400	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:77744400-77765400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:77747400-77756200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:77747800-77748600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:77747800-77748600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:77748400-77758000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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