Variant report

Variant	rs17404500
Chromosome Location	chr7:77956536-77956537
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12154982	1.00[AFR][1000 genomes]
rs12216677	1.00[AFR][1000 genomes]
rs17344319	1.00[AFR][1000 genomes]
rs9649283	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1034622	chr7:77579053-77958967	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv538984	chr7:77579053-77958967	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv532146	chr7:77612319-77958966	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77946200-77976000	Weak transcription	Aorta	Aorta
2	chr7:77953600-77957800	Weak transcription	Fetal Brain Male	brain
3	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:77954800-77956600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:77955000-77956600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:77955000-77956600	Enhancers	HSMMtube	muscle
7	chr7:77955000-77956800	Enhancers	HSMM	muscle
8	chr7:77955000-77957200	Enhancers	Placenta	Placenta
9	chr7:77955000-77957400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:77955200-77956600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:77955200-77963000	Weak transcription	Esophagus	oesophagus
12	chr7:77955400-77956600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:77955400-77956800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:77955400-77956800	Enhancers	Osteobl	bone
15	chr7:77955400-77958800	Enhancers	Fetal Heart	heart
16	chr7:77955600-77958600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:77955800-77956600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:77955800-77956600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr7:77955800-77957000	Enhancers	Right Ventricle	heart
20	chr7:77955800-77957600	Enhancers	Brain Anterior Caudate	brain
21	chr7:77955800-77957600	Enhancers	Brain Hippocampus Middle	brain
22	chr7:77955800-77957600	Enhancers	Fetal Muscle Leg	muscle
23	chr7:77955800-77958800	Enhancers	Brain Germinal Matrix	brain
24	chr7:77956200-77956600	Enhancers	Lung	lung
25	chr7:77956200-77956600	Enhancers	NHLF	lung
26	chr7:77956200-77956800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr7:77956200-77956800	Enhancers	Left Ventricle	heart
28	chr7:77956200-77956800	Enhancers	Ovary	ovary
29	chr7:77956200-77957000	Enhancers	Brain Angular Gyrus	brain
30	chr7:77956200-77957000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:77956200-77957000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr7:77956200-77957000	Enhancers	Psoas Muscle	Psoas
33	chr7:77956200-77957200	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr7:77956200-77957200	Enhancers	Brain Substantia Nigra	brain
35	chr7:77956400-77956800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr7:77956400-77957000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr7:77956400-77957000	Enhancers	Brain Cingulate Gyrus	brain

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