Variant report
| Variant | rs12156117 |
|---|---|
| Chromosome Location | chr8:10947050-10947051 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10087767 | 1.00[ASN][1000 genomes] |
| rs11783227 | 1.00[ASN][1000 genomes] |
| rs11785392 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13248264 | 0.85[AMR][1000 genomes] |
| rs13248300 | 0.83[EUR][1000 genomes] |
| rs13265533 | 0.84[EUR][1000 genomes] |
| rs13273857 | 1.00[ASN][1000 genomes] |
| rs13275102 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13276836 | 1.00[ASN][1000 genomes] |
| rs17152841 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs17779791 | 0.83[EUR][1000 genomes] |
| rs2409692 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2409693 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2409695 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36089015 | 1.00[ASN][1000 genomes] |
| rs4618656 | 1.00[ASN][1000 genomes] |
| rs4840536 | 0.81[AMR][1000 genomes] |
| rs4840541 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4841491 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4841508 | 1.00[ASN][1000 genomes] |
| rs67841554 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7000132 | 1.00[ASN][1000 genomes] |
| rs7823610 | 0.80[EUR][1000 genomes] |
| rs9657544 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9657545 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035072 | chr8:10819444-11480692 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv539473 | chr8:10819444-11480692 | Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 3 | esv1815171 | chr8:10940039-11128712 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 4 | nsv1025426 | chr8:10942929-11037903 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12156117 | C8orf5 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:10943000-10948400 | Weak transcription | Gastric | stomach |
