Variant report

Variant	rs13265533
Chromosome Location	chr8:10928852-10928853
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10903337	1.00[ASN][1000 genomes]
rs11774266	1.00[ASN][1000 genomes]
rs11775254	1.00[ASN][1000 genomes]
rs11776637	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11780798	1.00[ASN][1000 genomes]
rs12156117	0.84[EUR][1000 genomes]
rs13248300	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251528	1.00[ASN][1000 genomes]
rs13261031	1.00[ASN][1000 genomes]
rs13264636	1.00[ASN][1000 genomes]
rs34270982	1.00[ASN][1000 genomes]
rs4407841	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840541	0.81[EUR][1000 genomes]
rs4841484	1.00[ASN][1000 genomes]
rs4841487	1.00[ASN][1000 genomes]
rs6601556	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67841554	1.00[ASN][1000 genomes]
rs7821839	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9657544	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13265533	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10922000-10929600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:10924600-10929400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:10924800-10931400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:10925000-10929200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:10925000-10930800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:10925000-10931200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:10925000-10931200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:10925000-10941800	Weak transcription	Right Atrium	heart
9	chr8:10925200-10929400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:10925400-10929400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr8:10925400-10929400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:10925400-10931200	Weak transcription	HSMMtube	muscle
13	chr8:10925600-10929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:10925600-10929400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:10925600-10935800	Weak transcription	Spleen	Spleen
16	chr8:10925600-10944400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:10925800-10929200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:10925800-10929600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:10925800-10929600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:10926000-10929200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:10926000-10931200	Weak transcription	Brain Angular Gyrus	brain
22	chr8:10926200-10929600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:10926200-10931200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:10926400-10929200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:10926400-10929400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:10926400-10929600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:10927000-10929200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:10927200-10929400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr8:10927200-10929400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr8:10927800-10929600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:10928400-10930200	Enhancers	GM12878-XiMat	blood

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