Variant report
Variant | rs13251528 |
---|---|
Chromosome Location | chr8:10896389-10896390 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10087767 | 1.00[CHB][hapmap] |
rs10088853 | 1.00[CHB][hapmap] |
rs10089518 | 1.00[CHB][hapmap] |
rs10100660 | 1.00[CHB][hapmap] |
rs10101329 | 1.00[CHB][hapmap] |
rs10110684 | 1.00[CHB][hapmap] |
rs10503417 | 1.00[CHB][hapmap] |
rs10903337 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs11250092 | 1.00[CHB][hapmap] |
rs11774266 | 1.00[ASN][1000 genomes] |
rs11775254 | 1.00[ASN][1000 genomes] |
rs11776603 | 1.00[CHB][hapmap] |
rs11776637 | 1.00[ASN][1000 genomes] |
rs11777887 | 1.00[CHB][hapmap] |
rs11777918 | 1.00[CHB][hapmap] |
rs11778121 | 1.00[CHB][hapmap] |
rs11780798 | 0.85[CEU][hapmap];1.00[ASN][1000 genomes] |
rs11783045 | 1.00[CHB][hapmap] |
rs11785392 | 1.00[CHB][hapmap] |
rs11989369 | 1.00[CHB][hapmap] |
rs13248014 | 1.00[CHB][hapmap] |
rs13248264 | 1.00[CHB][hapmap] |
rs13248300 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs13249916 | 1.00[CHB][hapmap] |
rs13256743 | 1.00[CHB][hapmap] |
rs13261031 | 1.00[ASN][1000 genomes] |
rs13264636 | 1.00[ASN][1000 genomes] |
rs13265533 | 1.00[ASN][1000 genomes] |
rs13265553 | 1.00[CHB][hapmap] |
rs13273857 | 1.00[CHB][hapmap] |
rs13276708 | 1.00[CHB][hapmap] |
rs13276836 | 1.00[CHB][hapmap] |
rs17152841 | 1.00[CHB][hapmap] |
rs17725480 | 1.00[CHB][hapmap] |
rs17725534 | 1.00[CHB][hapmap] |
rs17726209 | 1.00[CHB][hapmap] |
rs17779791 | 1.00[CHB][hapmap] |
rs17782536 | 1.00[CHB][hapmap] |
rs17782554 | 1.00[CHB][hapmap] |
rs1987190 | 1.00[CHB][hapmap] |
rs2409691 | 1.00[CHB][hapmap] |
rs2409692 | 1.00[CHB][hapmap] |
rs2409693 | 1.00[CHB][hapmap] |
rs2409695 | 1.00[CHB][hapmap] |
rs2409719 | 1.00[CHB][hapmap] |
rs2409720 | 1.00[CHB][hapmap] |
rs2409729 | 1.00[CHB][hapmap] |
rs3021495 | 1.00[CHB][hapmap] |
rs3021497 | 1.00[CHB][hapmap] |
rs34270982 | 1.00[ASN][1000 genomes] |
rs4240671 | 1.00[CHB][hapmap] |
rs4240672 | 1.00[CHB][hapmap] |
rs4291231 | 1.00[CHB][hapmap] |
rs4326350 | 1.00[CHB][hapmap] |
rs4407841 | 1.00[ASN][1000 genomes] |
rs4451268 | 1.00[CHB][hapmap] |
rs4618656 | 1.00[CHB][hapmap] |
rs4642600 | 1.00[CHB][hapmap] |
rs4840548 | 1.00[CHB][hapmap] |
rs4841460 | 1.00[CHB][hapmap] |
rs4841484 | 1.00[ASN][1000 genomes] |
rs4841486 | 1.00[CHB][hapmap] |
rs4841487 | 1.00[ASN][1000 genomes] |
rs4841497 | 1.00[CHB][hapmap] |
rs6601556 | 1.00[ASN][1000 genomes] |
rs6601561 | 1.00[CHB][hapmap] |
rs6601563 | 1.00[CHB][hapmap] |
rs67841554 | 1.00[ASN][1000 genomes] |
rs6985109 | 1.00[CHB][hapmap] |
rs7821826 | 1.00[CHB][hapmap] |
rs7821839 | 1.00[ASN][1000 genomes] |
rs7832722 | 1.00[CHB][hapmap] |
rs9329238 | 1.00[CHB][hapmap] |
rs9657544 | 1.00[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1035072 | chr8:10819444-11480692 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
2 | nsv539473 | chr8:10819444-11480692 | Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
3 | nsv1022434 | chr8:10866242-10916523 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:10880000-10896800 | Weak transcription | H1 Cell Line | embryonic stem cell |
2 | chr8:10883400-10899600 | Weak transcription | Brain Anterior Caudate | brain |
3 | chr8:10889800-10910800 | Weak transcription | HSMMtube | muscle |
4 | chr8:10890400-10896800 | Weak transcription | Spleen | Spleen |