Variant report

Variant	rs10089518
Chromosome Location	chr8:10839803-10839804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10087767	1.00[CHB][hapmap]
rs10088408	0.85[EUR][1000 genomes]
rs10088853	1.00[CHB][hapmap]
rs10096381	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs10096421	0.92[CEU][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs10096511	0.84[EUR][1000 genomes]
rs10100660	1.00[CHB][hapmap]
rs10101329	1.00[CHB][hapmap]
rs10108618	0.90[MEX][hapmap]
rs10110684	1.00[CHB][hapmap]
rs10111950	0.83[EUR][1000 genomes]
rs10503417	1.00[CHB][hapmap]
rs10903337	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11250092	1.00[CHB][hapmap]
rs11250097	0.87[EUR][1000 genomes]
rs11250098	0.82[EUR][1000 genomes]
rs11250099	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs11250103	0.84[GIH][hapmap]
rs11774266	1.00[ASN][1000 genomes]
rs11775254	1.00[ASN][1000 genomes]
rs11776603	1.00[CHB][hapmap]
rs11776637	1.00[ASN][1000 genomes]
rs11777887	1.00[CHB][hapmap]
rs11777918	1.00[CHB][hapmap]
rs11778121	1.00[CHB][hapmap]
rs11780798	1.00[ASN][1000 genomes]
rs11785392	1.00[CHB][hapmap]
rs11991118	0.95[MEX][hapmap]
rs13248014	1.00[CHB][hapmap]
rs13248264	1.00[CHB][hapmap]
rs13248300	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13249916	1.00[CHB][hapmap]
rs13251528	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13256743	1.00[CHB][hapmap]
rs13261031	1.00[ASN][1000 genomes]
rs13264636	1.00[ASN][1000 genomes]
rs13265533	1.00[ASN][1000 genomes]
rs13265553	1.00[CHB][hapmap]
rs13273857	1.00[CHB][hapmap]
rs13276708	1.00[CHB][hapmap]
rs13276836	1.00[CHB][hapmap]
rs17152841	1.00[CHB][hapmap]
rs17725480	1.00[CHB][hapmap]
rs17725534	1.00[CHB][hapmap]
rs17726209	1.00[CHB][hapmap]
rs17779791	1.00[CHB][hapmap]
rs17782536	1.00[CHB][hapmap]
rs17782554	1.00[CHB][hapmap]
rs2409689	0.95[MEX][hapmap]
rs2409691	1.00[CHB][hapmap];0.95[MEX][hapmap]
rs2409692	1.00[CHB][hapmap]
rs2409693	1.00[CHB][hapmap]
rs2409695	1.00[CHB][hapmap]
rs2409718	0.90[MEX][hapmap]
rs2409719	1.00[CHB][hapmap]
rs2409720	1.00[CHB][hapmap]
rs3021494	0.85[MEX][hapmap]
rs3021495	1.00[CHB][hapmap]
rs3021497	1.00[CHB][hapmap]
rs34270982	1.00[ASN][1000 genomes]
rs34738102	0.96[EUR][1000 genomes]
rs35910832	0.84[EUR][1000 genomes]
rs4240671	1.00[CHB][hapmap]
rs4240672	1.00[CHB][hapmap]
rs4291231	1.00[CHB][hapmap]
rs4314618	0.83[EUR][1000 genomes]
rs4326350	1.00[CHB][hapmap]
rs4407841	1.00[ASN][1000 genomes]
rs4451266	0.96[EUR][1000 genomes]
rs4451267	0.97[EUR][1000 genomes]
rs4451268	1.00[CHB][hapmap]
rs4618656	1.00[CHB][hapmap]
rs4642600	1.00[CHB][hapmap]
rs4840530	0.82[GIH][hapmap]
rs4840548	1.00[CHB][hapmap]
rs4841460	1.00[CHB][hapmap]
rs4841465	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs4841466	0.85[EUR][1000 genomes]
rs4841484	1.00[ASN][1000 genomes]
rs4841486	1.00[CHB][hapmap]
rs4841487	1.00[ASN][1000 genomes]
rs4841497	1.00[CHB][hapmap]
rs4841498	0.85[MEX][hapmap]
rs6601544	0.96[CEU][hapmap];0.86[GIH][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs6601556	1.00[ASN][1000 genomes]
rs6601561	1.00[CHB][hapmap]
rs6601563	1.00[CHB][hapmap]
rs6601564	0.90[MEX][hapmap]
rs67841554	1.00[ASN][1000 genomes]
rs6980856	0.95[MEX][hapmap]
rs6985109	1.00[CHB][hapmap]
rs6996943	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs7010262	0.96[EUR][1000 genomes]
rs7010719	0.97[EUR][1000 genomes]
rs7011106	0.95[EUR][1000 genomes]
rs7011268	0.97[EUR][1000 genomes]
rs7014861	0.96[EUR][1000 genomes]
rs7821826	1.00[CHB][hapmap]
rs7821839	1.00[ASN][1000 genomes]
rs7832722	1.00[CHB][hapmap]
rs9329238	1.00[CHB][hapmap]
rs9657519	0.90[MEX][hapmap]
rs9657544	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs10089518	C8orf13	Cis_1M	lymphoblastoid	RTeQTL
rs10089518	TDH	cis	cerebellum	SCAN
rs10089518	BLK	cis	lymphoblastoid	seeQTL
rs10089518	DEFB134	cis	cerebellum	SCAN
rs10089518	BLK	Cis_1M	lymphoblastoid	RTeQTL
rs10089518	MFHAS1	cis	cerebellum	SCAN
rs10089518	PRSS55	cis	cerebellum	SCAN
rs10089518	FLJ10661	cis	cerebellum	SCAN
rs10089518	C8orf5	Cis_1M	lymphoblastoid	RTeQTL
rs10089518	CTSB	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links