Variant report
Variant | rs6985109 |
---|---|
Chromosome Location | chr8:10761585-10761586 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10087767 | 1.00[CHB][hapmap] |
rs10089518 | 1.00[CHB][hapmap] |
rs10090444 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10107145 | 1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10903337 | 1.00[CHB][hapmap] |
rs11250084 | 1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes] |
rs11250092 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11250093 | 0.96[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes] |
rs11250094 | 0.87[CEU][hapmap] |
rs11783247 | 0.92[CEU][hapmap];0.93[TSI][hapmap] |
rs11785392 | 1.00[CHB][hapmap] |
rs12542037 | 0.96[CEU][hapmap];0.93[EUR][1000 genomes] |
rs12546366 | 0.89[CEU][hapmap];0.84[TSI][hapmap] |
rs13248264 | 1.00[CHB][hapmap] |
rs13248287 | 1.00[JPT][hapmap] |
rs13248300 | 1.00[CHB][hapmap] |
rs13251528 | 1.00[CHB][hapmap] |
rs13273857 | 1.00[CHB][hapmap] |
rs13279922 | 1.00[JPT][hapmap] |
rs1430866 | 1.00[JPT][hapmap] |
rs1529598 | 1.00[JPT][hapmap] |
rs17152841 | 1.00[CHB][hapmap] |
rs17779791 | 1.00[CHB][hapmap] |
rs2409691 | 1.00[CHB][hapmap] |
rs2409692 | 1.00[CHB][hapmap] |
rs2409693 | 1.00[CHB][hapmap] |
rs2409695 | 1.00[CHB][hapmap] |
rs34741518 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs4073948 | 0.84[EUR][1000 genomes] |
rs4240671 | 1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes] |
rs4240672 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes] |
rs4240673 | 0.96[CEU][hapmap];0.93[TSI][hapmap] |
rs4326350 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs4841457 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4841460 | 1.00[CHB][hapmap] |
rs4841465 | 0.81[CEU][hapmap] |
rs4841486 | 1.00[CHB][hapmap] |
rs6601561 | 1.00[CHB][hapmap] |
rs6984496 | 0.96[CEU][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes] |
rs6997839 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6997997 | 0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7016385 | 0.92[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs7813037 | 1.00[JPT][hapmap] |
rs7821826 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes] |
rs7823296 | 0.88[CEU][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs9657544 | 1.00[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv917085 | chr8:10237508-10828204 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
2 | nsv1017836 | chr8:10591801-10803617 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
3 | nsv1034988 | chr8:10591801-10804243 | Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
4 | nsv831232 | chr8:10606053-10774948 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 12 gene(s) | inside rSNPs | diseases |
5 | nsv1025190 | chr8:10756331-10802566 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:10753000-10763600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
2 | chr8:10754200-10762000 | Weak transcription | Brain Inferior Temporal Lobe | brain |
3 | chr8:10760000-10761600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
4 | chr8:10761000-10762200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |