Variant report

Variant	rs4841460
Chromosome Location	chr8:10789493-10789494
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10787098..10789727-chr8:10819770..10822042,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10087767	1.00[CHB][hapmap]
rs10088853	1.00[CHB][hapmap]
rs10089518	1.00[CHB][hapmap]
rs10903332	0.86[ASN][1000 genomes]
rs10903333	0.86[ASN][1000 genomes]
rs10903337	1.00[CHB][hapmap]
rs11250086	0.83[EUR][1000 genomes]
rs11250092	1.00[CHB][hapmap]
rs11250093	1.00[CHB][hapmap]
rs11250094	1.00[CHB][hapmap]
rs11776368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11777034	0.87[ASN][1000 genomes]
rs11778121	1.00[CHB][hapmap]
rs11780501	0.87[ASN][1000 genomes]
rs11783247	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11785392	1.00[CHB][hapmap]
rs11986699	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11990550	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11993591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12546366	1.00[CHB][hapmap]
rs12548184	0.92[EUR][1000 genomes]
rs13248264	1.00[CHB][hapmap]
rs13248300	1.00[CHB][hapmap]
rs13249916	1.00[CHB][hapmap]
rs13251528	1.00[CHB][hapmap]
rs13265553	1.00[CHB][hapmap]
rs13270870	0.84[EUR][1000 genomes]
rs13273857	1.00[CHB][hapmap]
rs13276708	1.00[CHB][hapmap]
rs13276836	1.00[CHB][hapmap]
rs17152841	1.00[CHB][hapmap]
rs17779791	1.00[CHB][hapmap]
rs2409691	1.00[CHB][hapmap]
rs2409692	1.00[CHB][hapmap]
rs2409693	1.00[CHB][hapmap]
rs2409695	1.00[CHB][hapmap]
rs34497451	1.00[ASN][1000 genomes]
rs35077714	0.80[ASN][1000 genomes]
rs4240671	1.00[CHB][hapmap]
rs4240672	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs4240673	1.00[CHB][hapmap]
rs4256557	0.93[ASN][1000 genomes]
rs4326350	1.00[CHB][hapmap]
rs4520127	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4554431	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4618656	1.00[CHB][hapmap]
rs4841458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4841461	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4841486	1.00[CHB][hapmap]
rs4841497	1.00[CHB][hapmap]
rs6601561	1.00[CHB][hapmap]
rs6601563	1.00[CHB][hapmap]
rs6984496	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6985109	1.00[CHB][hapmap]
rs6988281	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6992103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7005884	1.00[CHB][hapmap];0.91[AFR][1000 genomes]
rs7015168	1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7016385	1.00[CHB][hapmap]
rs7814762	0.93[ASN][1000 genomes]
rs7821826	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7823296	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7832722	1.00[CHB][hapmap]
rs7834121	0.84[EUR][1000 genomes]
rs7834248	0.81[EUR][1000 genomes]
rs7837038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7843470	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9657544	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1025190	chr8:10756331-10802566	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4841460	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links