Variant report
| Variant | rs7005884 |
|---|---|
| Chromosome Location | chr8:10796472-10796473 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11250092 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11250093 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11250094 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11776368 | 1.00[CHB][hapmap] |
| rs11777007 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11783247 | 1.00[CHB][hapmap] |
| rs11783749 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11990550 | 1.00[CHB][hapmap] |
| rs11993591 | 1.00[CHB][hapmap] |
| rs12546366 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs13265197 | 1.00[JPT][hapmap] |
| rs2409692 | 1.00[CHB][hapmap] |
| rs34741518 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4240673 | 1.00[CHB][hapmap] |
| rs4520127 | 1.00[CHB][hapmap] |
| rs4841457 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4841458 | 1.00[CHB][hapmap] |
| rs4841460 | 1.00[CHB][hapmap] |
| rs6984496 | 1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6988281 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs6992103 | 1.00[CHB][hapmap] |
| rs7015168 | 1.00[CHB][hapmap] |
| rs7016385 | 1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7823296 | 1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7833435 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7837038 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917085 | chr8:10237508-10828204 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017836 | chr8:10591801-10803617 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034988 | chr8:10591801-10804243 | Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv1025190 | chr8:10756331-10802566 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7005884 | C8orf5 | Cis_1M | lymphoblastoid | RTeQTL |
| rs7005884 | BLK | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:10795800-10805800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr8:10796000-10799800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
