Variant report

Variant	rs7837038
Chromosome Location	chr8:10783074-10783075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10903332	0.93[ASN][1000 genomes]
rs10903333	0.93[ASN][1000 genomes]
rs11250086	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11250092	0.82[CEU][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs11250093	1.00[CHB][hapmap]
rs11250094	1.00[CHB][hapmap]
rs11776368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11777034	0.81[ASN][1000 genomes]
rs11780501	0.81[ASN][1000 genomes]
rs11783247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11986699	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11990550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11993591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12546366	1.00[CHB][hapmap]
rs12548184	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13270870	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2409692	1.00[CHB][hapmap]
rs34497451	0.93[ASN][1000 genomes]
rs34741518	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4240671	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4240672	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4240673	1.00[CHB][hapmap];0.91[YRI][hapmap]
rs4256557	0.87[ASN][1000 genomes]
rs4326350	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs4520127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4554431	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840525	0.81[EUR][1000 genomes]
rs4841457	0.83[ASN][1000 genomes]
rs4841458	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4841460	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4841461	0.87[ASN][1000 genomes]
rs6984496	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6988281	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6992103	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6997839	0.83[EUR][1000 genomes]
rs6997997	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7005884	1.00[CHB][hapmap]
rs7015168	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016385	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7814762	0.87[ASN][1000 genomes]
rs7821826	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7823296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7834121	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7834248	0.85[EUR][1000 genomes]
rs7843470	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1025190	chr8:10756331-10802566	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7837038	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10779400-10785400	Weak transcription	Brain Anterior Caudate	brain
2	chr8:10779400-10785600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:10779600-10785600	Weak transcription	Brain Angular Gyrus	brain
4	chr8:10780000-10785600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:10780400-10783200	Weak transcription	Brain Germinal Matrix	brain
6	chr8:10780400-10785400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:10780400-10785800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:10780400-10785800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:10780600-10785600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:10781800-10783200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:10782600-10783200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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