Variant report

Variant	rs6988281
Chromosome Location	chr8:10802102-10802103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10800953..10803714-chr8:10805735..10807983,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11250093	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11250094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11776368	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs11777007	0.84[ASN][1000 genomes]
rs11777034	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11780501	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783247	1.00[CHB][hapmap]
rs11986699	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11990550	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11993591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12546366	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13248287	0.81[CEU][hapmap]
rs13279922	0.81[CEU][hapmap]
rs1430866	0.81[CEU][hapmap]
rs2409692	1.00[CHB][hapmap]
rs34497451	0.87[ASN][1000 genomes]
rs35077714	0.94[ASN][1000 genomes]
rs4240673	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4256557	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4520127	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4554431	0.81[ASN][1000 genomes]
rs4841458	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4841460	1.00[CHB][hapmap]
rs4841461	0.91[CEU][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6984496	1.00[CHB][hapmap]
rs6992103	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7005884	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7015168	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7016385	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7814762	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7823296	1.00[CHB][hapmap]
rs7837038	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7843470	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1025190	chr8:10756331-10802566	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv522127	chr8:10797831-10815515	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10795800-10805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:10797600-10807200	Weak transcription	Right Atrium	heart
3	chr8:10800600-10803400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:10801600-10802600	Enhancers	Fetal Muscle Leg	muscle
5	chr8:10801600-10802800	Enhancers	Fetal Heart	heart
6	chr8:10801800-10802400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:10801800-10802600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:10801800-10802600	Enhancers	HSMMtube	muscle
9	chr8:10801800-10802800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:10801800-10802800	Enhancers	Fetal Muscle Trunk	muscle
11	chr8:10802000-10802400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:10802000-10802400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr8:10802000-10802600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:10802000-10802600	Enhancers	Right Ventricle	heart
15	chr8:10802000-10802800	Enhancers	Left Ventricle	heart

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