Variant report

Variant	rs13279922
Chromosome Location	chr8:10763133-10763134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10763108..10765386-chr8:10767058..10768941,2	K562	blood:
2	chr8:10760620..10764608-chr8:10766304..10768558,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11250084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11776011	1.00[ASN][1000 genomes]
rs11784061	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784331	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986699	0.82[CEU][hapmap]
rs11993591	0.81[CEU][hapmap]
rs13248287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270870	0.87[ASN][1000 genomes]
rs13273857	1.00[CHB][hapmap]
rs13279307	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430866	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1529598	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17152653	0.84[YRI][hapmap]
rs17152673	0.92[YRI][hapmap]
rs34716741	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35888807	0.87[ASN][1000 genomes]
rs4240671	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4240672	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4326350	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4520127	0.83[CEU][hapmap]
rs4840525	0.87[ASN][1000 genomes]
rs57145255	1.00[ASN][1000 genomes]
rs6985109	1.00[JPT][hapmap]
rs6985767	0.87[ASN][1000 genomes]
rs6988281	0.81[CEU][hapmap]
rs6992103	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs6997839	0.87[ASN][1000 genomes]
rs6997997	0.87[ASN][1000 genomes]
rs71516598	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7813037	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821826	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1025190	chr8:10756331-10802566	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10753000-10763600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:10761600-10763200	Enhancers	Fetal Muscle Leg	muscle
3	chr8:10761600-10765400	Weak transcription	Pancreas	Pancrea
4	chr8:10762400-10763200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:10762400-10778800	Weak transcription	Brain Angular Gyrus	brain
6	chr8:10762600-10763200	Enhancers	Fetal Stomach	stomach
7	chr8:10762600-10763200	Enhancers	HSMMtube	muscle
8	chr8:10762600-10763600	Enhancers	Fetal Brain Male	brain

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