Variant report
| Variant | rs12157998 |
|---|---|
| Chromosome Location | chr22:29532971-29532972 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:29483400-29550200 | Weak transcription | Rectal Smooth Muscle | rectum |
| 2 | chr22:29490400-29539800 | Weak transcription | Psoas Muscle | Psoas |
| 3 | chr22:29493200-29536400 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 4 | chr22:29505800-29533000 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 5 | chr22:29508200-29537200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 6 | chr22:29512600-29533000 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 7 | chr22:29515000-29533000 | Weak transcription | Colon Smooth Muscle | Colon |
| 8 | chr22:29515600-29533800 | Weak transcription | Brain Germinal Matrix | brain |
| 9 | chr22:29517200-29546200 | Strong transcription | Dnd41 | blood |
| 10 | chr22:29518400-29535800 | Strong transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 11 | chr22:29519400-29533800 | Weak transcription | Fetal Brain Female | brain |
| 12 | chr22:29520600-29534200 | Weak transcription | Brain Cingulate Gyrus | brain |
| 13 | chr22:29521400-29533400 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 14 | chr22:29522000-29533400 | Weak transcription | Colonic Mucosa | Colon |
| 15 | chr22:29522400-29541600 | Weak transcription | HMEC | breast |
| 16 | chr22:29522600-29533200 | Weak transcription | Right Ventricle | heart |
| 17 | chr22:29522600-29533800 | Weak transcription | Adipose Nuclei | Adipose |
| 18 | chr22:29522600-29538000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 19 | chr22:29523000-29533400 | Weak transcription | NHEK | skin |
| 20 | chr22:29523000-29534600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 21 | chr22:29523400-29548200 | Weak transcription | Stomach Mucosa | stomach |
| 22 | chr22:29524400-29533800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 23 | chr22:29525400-29536000 | Strong transcription | Breast Myoepithelial Primary Cells | Breast |
| 24 | chr22:29525800-29535800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 25 | chr22:29525800-29544400 | Weak transcription | NHLF | lung |
| 26 | chr22:29526000-29533000 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 27 | chr22:29526000-29533000 | Weak transcription | HSMM | muscle |
| 28 | chr22:29526000-29535600 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 29 | chr22:29526000-29536200 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 30 | chr22:29526200-29542800 | Weak transcription | Fetal Heart | heart |
| 31 | chr22:29526200-29547000 | Weak transcription | K562 | blood |
| 32 | chr22:29526400-29535800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 33 | chr22:29526800-29533400 | Weak transcription | NHDF-Ad | bronchial |
| 34 | chr22:29527600-29548000 | Strong transcription | Fetal Intestine Small | intestine |
| 35 | chr22:29528000-29539000 | Strong transcription | Ovary | ovary |
| 36 | chr22:29528200-29535600 | Strong transcription | Fetal Lung | lung |
| 37 | chr22:29528600-29544400 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 38 | chr22:29529400-29547000 | Strong transcription | Thymus | Thymus |
| 39 | chr22:29529800-29535800 | Strong transcription | Fetal Thymus | thymus |
| 40 | chr22:29530000-29535600 | Weak transcription | HepG2 | liver |
| 41 | chr22:29530000-29541400 | Strong transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 42 | chr22:29530400-29535800 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 43 | chr22:29530800-29546800 | Genic enhancers | Fetal Muscle Leg | muscle |
| 44 | chr22:29531000-29536200 | Weak transcription | Fetal Kidney | kidney |
| 45 | chr22:29531000-29540800 | Strong transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 46 | chr22:29531000-29541000 | Strong transcription | Stomach Smooth Muscle | stomach |
| 47 | chr22:29531200-29533200 | Weak transcription | Placenta | Placenta |
| 48 | chr22:29531200-29533400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 49 | chr22:29531200-29539000 | Strong transcription | Esophagus | oesophagus |
| 50 | chr22:29531600-29533000 | Weak transcription | Fetal Intestine Large | intestine |
