Variant report

Variant	rs12173729
Chromosome Location	chr2:139444881-139444882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11751189	0.81[EUR][1000 genomes]
rs11751191	0.81[EUR][1000 genomes]
rs11752770	0.81[EUR][1000 genomes]
rs11758090	0.81[EUR][1000 genomes]
rs1338831	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1361261	0.81[EUR][1000 genomes]
rs16895185	0.81[EUR][1000 genomes]
rs34221705	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34693171	0.81[EUR][1000 genomes]
rs4286758	0.81[EUR][1000 genomes]
rs4710478	0.81[EUR][1000 genomes]
rs68016062	0.81[EUR][1000 genomes]
rs72887700	0.81[EUR][1000 genomes]
rs875375	0.80[EUR][1000 genomes]
rs9351246	0.81[EUR][1000 genomes]
rs9353806	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs956458	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875159	chr2:138625506-139607947	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:139424600-139447600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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