Variant report

Variant	rs16895185
Chromosome Location	chr6:65122622-65122623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHF3-2	chr6:65122529-65122672	ENSG00000232120.1

Extended variants
information (count: 245 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:237)

rs_ID	r²[population]
rs1028482	0.89[EUR][1000 genomes]
rs1028484	0.91[EUR][1000 genomes]
rs10494882	0.83[ASN][1000 genomes]
rs10494883	0.93[ASN][1000 genomes]
rs10806408	0.88[EUR][1000 genomes]
rs10806431	0.83[EUR][1000 genomes]
rs11751189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751191	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11752770	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758090	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759853	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12173729	0.81[EUR][1000 genomes]
rs12174056	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12175973	0.85[EUR][1000 genomes]
rs12176482	0.83[EUR][1000 genomes]
rs12190681	0.86[EUR][1000 genomes]
rs13193668	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13194506	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13199165	0.94[ASN][1000 genomes]
rs13202092	0.90[ASN][1000 genomes]
rs13209579	0.81[EUR][1000 genomes]
rs13212221	0.89[ASN][1000 genomes]
rs13212239	0.92[ASN][1000 genomes]
rs13212470	0.90[ASN][1000 genomes]
rs13212894	0.84[ASN][1000 genomes]
rs13218626	0.94[ASN][1000 genomes]
rs1337511	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1337512	0.85[ASN][1000 genomes]
rs1337519	0.90[ASN][1000 genomes]
rs1337520	0.90[ASN][1000 genomes]
rs1338831	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1361261	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1474829	0.87[EUR][1000 genomes]
rs1474830	0.88[EUR][1000 genomes]
rs1474831	0.88[EUR][1000 genomes]
rs1474832	0.88[EUR][1000 genomes]
rs1474833	0.88[EUR][1000 genomes]
rs1543405	0.88[EUR][1000 genomes]
rs1555223	0.88[EUR][1000 genomes]
rs1555224	0.88[EUR][1000 genomes]
rs1555225	0.86[EUR][1000 genomes]
rs1555226	0.88[EUR][1000 genomes]
rs16895190	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16895262	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16895263	0.85[ASN][1000 genomes]
rs16895281	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16895329	0.93[ASN][1000 genomes]
rs16895394	0.94[ASN][1000 genomes]
rs1739409	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1884177	0.88[EUR][1000 genomes]
rs1884179	0.90[EUR][1000 genomes]
rs1922946	0.87[EUR][1000 genomes]
rs1922948	0.88[EUR][1000 genomes]
rs1922949	0.88[EUR][1000 genomes]
rs1922954	0.89[EUR][1000 genomes]
rs1922956	0.90[EUR][1000 genomes]
rs1922957	0.89[EUR][1000 genomes]
rs1922958	0.91[EUR][1000 genomes]
rs1922959	0.90[EUR][1000 genomes]
rs1922960	0.90[EUR][1000 genomes]
rs1922961	0.88[EUR][1000 genomes]
rs1922963	0.88[EUR][1000 genomes]
rs1922964	0.88[EUR][1000 genomes]
rs1922965	0.87[EUR][1000 genomes]
rs1922966	0.87[EUR][1000 genomes]
rs1922967	0.87[EUR][1000 genomes]
rs1922979	0.88[EUR][1000 genomes]
rs1922980	0.88[EUR][1000 genomes]
rs1922981	0.88[EUR][1000 genomes]
rs2057160	0.88[EUR][1000 genomes]
rs2057161	0.88[EUR][1000 genomes]
rs2057162	0.88[EUR][1000 genomes]
rs2057163	0.85[EUR][1000 genomes]
rs2057164	0.85[EUR][1000 genomes]
rs2057165	0.86[EUR][1000 genomes]
rs2144229	0.86[EUR][1000 genomes]
rs2144230	0.87[EUR][1000 genomes]
rs2180036	0.86[EUR][1000 genomes]
rs2180038	0.86[EUR][1000 genomes]
rs2180039	0.82[EUR][1000 genomes]
rs2207431	0.87[EUR][1000 genomes]
rs34221705	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34693171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34932369	0.86[EUR][1000 genomes]
rs35202570	0.82[EUR][1000 genomes]
rs35544049	0.85[EUR][1000 genomes]
rs3846796	0.82[ASN][1000 genomes]
rs3904796	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3915899	0.88[EUR][1000 genomes]
rs3930877	0.88[EUR][1000 genomes]
rs4084380	0.94[EUR][1000 genomes]
rs4235968	0.85[EUR][1000 genomes]
rs4235969	0.86[EUR][1000 genomes]
rs4286758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4351236	0.86[EUR][1000 genomes]
rs4365910	0.86[EUR][1000 genomes]
rs4435927	0.86[EUR][1000 genomes]
rs4472328	0.87[EUR][1000 genomes]
rs4482959	0.86[EUR][1000 genomes]
rs4504461	0.87[EUR][1000 genomes]
rs4518475	0.95[EUR][1000 genomes]
rs4599616	0.87[EUR][1000 genomes]
rs4645400	0.89[EUR][1000 genomes]
rs4710473	0.86[EUR][1000 genomes]
rs4710474	0.85[EUR][1000 genomes]
rs4710475	0.85[EUR][1000 genomes]
rs4710476	0.86[EUR][1000 genomes]
rs4710478	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs585253	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs585650	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs587146	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs594182	0.83[ASN][1000 genomes]
rs596677	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs596767	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs607416	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs609098	0.94[EUR][1000 genomes]
rs610848	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs622223	0.94[EUR][1000 genomes]
rs625112	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs626227	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs626316	0.92[EUR][1000 genomes]
rs637362	0.94[EUR][1000 genomes]
rs6454771	0.89[EUR][1000 genomes]
rs6454778	0.94[EUR][1000 genomes]
rs6454779	0.92[EUR][1000 genomes]
rs6454780	0.94[EUR][1000 genomes]
rs6454781	0.92[EUR][1000 genomes]
rs6454782	0.94[EUR][1000 genomes]
rs662644	0.87[EUR][1000 genomes]
rs666797	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs679299	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs679677	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68016062	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903027	0.87[EUR][1000 genomes]
rs6908118	0.94[EUR][1000 genomes]
rs6908520	0.94[EUR][1000 genomes]
rs6913077	0.94[EUR][1000 genomes]
rs6915053	0.87[EUR][1000 genomes]
rs6915412	0.88[EUR][1000 genomes]
rs6920553	0.84[ASN][1000 genomes]
rs6925966	0.88[EUR][1000 genomes]
rs6926103	0.88[EUR][1000 genomes]
rs6927333	0.88[EUR][1000 genomes]
rs6929549	0.91[EUR][1000 genomes]
rs6930252	0.88[EUR][1000 genomes]
rs6931855	0.94[EUR][1000 genomes]
rs6940639	0.88[EUR][1000 genomes]
rs72874924	0.86[ASN][1000 genomes]
rs72887700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7451037	0.88[EUR][1000 genomes]
rs7452152	0.86[EUR][1000 genomes]
rs7739082	0.94[EUR][1000 genomes]
rs7739628	0.83[EUR][1000 genomes]
rs7746514	0.84[ASN][1000 genomes]
rs7747074	0.89[EUR][1000 genomes]
rs7747790	0.87[EUR][1000 genomes]
rs7748983	0.87[EUR][1000 genomes]
rs7753480	0.89[EUR][1000 genomes]
rs7756960	0.93[EUR][1000 genomes]
rs7757098	0.85[EUR][1000 genomes]
rs7758228	0.85[EUR][1000 genomes]
rs7758253	0.85[EUR][1000 genomes]
rs7758780	0.90[EUR][1000 genomes]
rs7759081	0.90[EUR][1000 genomes]
rs7760920	0.84[EUR][1000 genomes]
rs7764565	0.87[EUR][1000 genomes]
rs7768934	0.87[EUR][1000 genomes]
rs7769524	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7773042	0.86[EUR][1000 genomes]
rs875375	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342186	0.87[EUR][1000 genomes]
rs9342187	0.87[EUR][1000 genomes]
rs9342191	0.88[EUR][1000 genomes]
rs9342192	0.88[EUR][1000 genomes]
rs9342197	0.88[EUR][1000 genomes]
rs9342288	0.85[ASN][1000 genomes]
rs9342308	0.92[ASN][1000 genomes]
rs9344916	0.81[EUR][1000 genomes]
rs9344917	0.86[EUR][1000 genomes]
rs9344918	0.86[EUR][1000 genomes]
rs9344919	0.81[EUR][1000 genomes]
rs9344924	0.84[EUR][1000 genomes]
rs9344931	0.88[EUR][1000 genomes]
rs9344936	0.88[EUR][1000 genomes]
rs9345146	0.83[ASN][1000 genomes]
rs9345178	0.83[ASN][1000 genomes]
rs9345179	0.83[ASN][1000 genomes]
rs9345180	0.83[ASN][1000 genomes]
rs9345182	0.94[ASN][1000 genomes]
rs9351194	0.86[EUR][1000 genomes]
rs9351198	0.86[EUR][1000 genomes]
rs9351199	0.86[EUR][1000 genomes]
rs9351200	0.86[EUR][1000 genomes]
rs9351246	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351287	0.83[ASN][1000 genomes]
rs9351291	0.83[ASN][1000 genomes]
rs9353658	0.86[EUR][1000 genomes]
rs9353659	0.81[EUR][1000 genomes]
rs9353663	0.87[EUR][1000 genomes]
rs9353665	0.88[EUR][1000 genomes]
rs9353679	0.88[EUR][1000 genomes]
rs9353682	0.91[EUR][1000 genomes]
rs9353683	0.91[EUR][1000 genomes]
rs9353691	0.90[EUR][1000 genomes]
rs9353806	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9353865	0.83[ASN][1000 genomes]
rs9353869	0.94[ASN][1000 genomes]
rs9359839	0.86[EUR][1000 genomes]
rs9359957	0.84[ASN][1000 genomes]
rs9359958	0.84[ASN][1000 genomes]
rs9362608	0.85[EUR][1000 genomes]
rs9362635	0.88[EUR][1000 genomes]
rs9362637	0.88[EUR][1000 genomes]
rs9362642	0.88[EUR][1000 genomes]
rs9362645	0.88[EUR][1000 genomes]
rs9362646	0.88[EUR][1000 genomes]
rs9362651	0.88[EUR][1000 genomes]
rs9362656	0.88[EUR][1000 genomes]
rs9362901	0.84[ASN][1000 genomes]
rs9362909	0.83[ASN][1000 genomes]
rs9362916	0.83[ASN][1000 genomes]
rs9444709	0.94[EUR][1000 genomes]
rs9444710	0.93[EUR][1000 genomes]
rs9444712	0.94[EUR][1000 genomes]
rs9444828	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9451209	0.82[EUR][1000 genomes]
rs9451222	0.88[EUR][1000 genomes]
rs9451281	0.87[EUR][1000 genomes]
rs9451282	0.87[EUR][1000 genomes]
rs9451283	0.94[EUR][1000 genomes]
rs9451826	0.81[ASN][1000 genomes]
rs956458	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973265	0.91[EUR][1000 genomes]
rs973266	0.89[EUR][1000 genomes]
rs987039	0.88[EUR][1000 genomes]
rs987040	0.88[EUR][1000 genomes]
rs987041	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015718	chr6:64821273-65479726	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv885999	chr6:64946169-65227097	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv462970	chr6:64971436-65198215	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv603391	chr6:64971436-65198215	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830675	chr6:65034132-65223344	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1828437	chr6:65098768-65155219	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65121800-65124200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:65121800-65125000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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