Variant report

Variant	rs34221705
Chromosome Location	chr7:89991480-89991481
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1028482	0.83[EUR][1000 genomes]
rs1028484	0.84[EUR][1000 genomes]
rs10494883	0.88[ASN][1000 genomes]
rs11751189	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11751191	0.92[EUR][1000 genomes]
rs11752770	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11758090	0.92[EUR][1000 genomes]
rs11759853	0.90[EUR][1000 genomes]
rs12173729	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12174056	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12176482	0.81[EUR][1000 genomes]
rs13193668	0.88[ASN][1000 genomes]
rs13194506	0.86[ASN][1000 genomes]
rs13199165	0.89[ASN][1000 genomes]
rs13202092	0.84[ASN][1000 genomes]
rs13212221	0.84[ASN][1000 genomes]
rs13212239	0.87[ASN][1000 genomes]
rs13212470	0.84[ASN][1000 genomes]
rs13218626	0.88[ASN][1000 genomes]
rs1337511	0.89[ASN][1000 genomes]
rs1337519	0.84[ASN][1000 genomes]
rs1337520	0.84[ASN][1000 genomes]
rs1338831	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1361261	0.92[EUR][1000 genomes]
rs1474829	0.80[EUR][1000 genomes]
rs1474830	0.81[EUR][1000 genomes]
rs1474831	0.81[EUR][1000 genomes]
rs1474832	0.81[EUR][1000 genomes]
rs1474833	0.81[EUR][1000 genomes]
rs16895185	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16895190	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16895262	0.89[ASN][1000 genomes]
rs16895281	0.88[ASN][1000 genomes]
rs16895329	0.88[ASN][1000 genomes]
rs16895394	0.88[ASN][1000 genomes]
rs1739409	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1884179	0.84[EUR][1000 genomes]
rs1922946	0.81[EUR][1000 genomes]
rs1922948	0.82[EUR][1000 genomes]
rs1922949	0.82[EUR][1000 genomes]
rs1922954	0.83[EUR][1000 genomes]
rs1922956	0.83[EUR][1000 genomes]
rs1922957	0.83[EUR][1000 genomes]
rs1922958	0.84[EUR][1000 genomes]
rs1922959	0.84[EUR][1000 genomes]
rs1922960	0.84[EUR][1000 genomes]
rs1922979	0.82[EUR][1000 genomes]
rs1922980	0.81[EUR][1000 genomes]
rs1922981	0.81[EUR][1000 genomes]
rs2144230	0.80[EUR][1000 genomes]
rs2207431	0.82[EUR][1000 genomes]
rs34693171	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3904796	0.89[ASN][1000 genomes]
rs4084380	0.87[EUR][1000 genomes]
rs4286758	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4518475	0.88[EUR][1000 genomes]
rs4645400	0.82[EUR][1000 genomes]
rs4710478	0.92[EUR][1000 genomes]
rs585253	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs585650	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs587146	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs596677	0.88[EUR][1000 genomes]
rs596767	0.88[EUR][1000 genomes]
rs607416	0.89[EUR][1000 genomes]
rs609098	0.88[EUR][1000 genomes]
rs610848	0.89[EUR][1000 genomes]
rs622223	0.87[EUR][1000 genomes]
rs625112	0.89[EUR][1000 genomes]
rs626227	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs626316	0.85[EUR][1000 genomes]
rs637362	0.87[EUR][1000 genomes]
rs6454771	0.83[EUR][1000 genomes]
rs6454778	0.88[EUR][1000 genomes]
rs6454779	0.85[EUR][1000 genomes]
rs6454780	0.88[EUR][1000 genomes]
rs6454781	0.85[EUR][1000 genomes]
rs6454782	0.88[EUR][1000 genomes]
rs662644	0.81[EUR][1000 genomes]
rs666797	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs679299	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs679677	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68016062	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6903027	0.81[EUR][1000 genomes]
rs6908118	0.88[EUR][1000 genomes]
rs6908520	0.88[EUR][1000 genomes]
rs6913077	0.88[EUR][1000 genomes]
rs6915053	0.80[EUR][1000 genomes]
rs6915412	0.81[EUR][1000 genomes]
rs6927333	0.82[EUR][1000 genomes]
rs6929549	0.84[EUR][1000 genomes]
rs6931855	0.88[EUR][1000 genomes]
rs6940639	0.82[EUR][1000 genomes]
rs71570681	0.81[EUR][1000 genomes]
rs72874924	0.82[ASN][1000 genomes]
rs72887700	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7739082	0.88[EUR][1000 genomes]
rs7747074	0.83[EUR][1000 genomes]
rs7753480	0.83[EUR][1000 genomes]
rs7756960	0.86[EUR][1000 genomes]
rs7758780	0.84[EUR][1000 genomes]
rs7759081	0.84[EUR][1000 genomes]
rs7769524	0.88[EUR][1000 genomes]
rs875375	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9342197	0.82[EUR][1000 genomes]
rs9342308	0.86[ASN][1000 genomes]
rs9344936	0.81[EUR][1000 genomes]
rs9345182	0.88[ASN][1000 genomes]
rs9351246	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9353679	0.82[EUR][1000 genomes]
rs9353682	0.84[EUR][1000 genomes]
rs9353683	0.84[EUR][1000 genomes]
rs9353691	0.84[EUR][1000 genomes]
rs9353806	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9353869	0.88[ASN][1000 genomes]
rs9362651	0.81[EUR][1000 genomes]
rs9362656	0.81[EUR][1000 genomes]
rs9444709	0.88[EUR][1000 genomes]
rs9444710	0.86[EUR][1000 genomes]
rs9444712	0.87[EUR][1000 genomes]
rs9444828	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9451222	0.82[EUR][1000 genomes]
rs9451281	0.81[EUR][1000 genomes]
rs9451282	0.81[EUR][1000 genomes]
rs9451283	0.88[EUR][1000 genomes]
rs956458	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs973265	0.84[EUR][1000 genomes]
rs973266	0.83[EUR][1000 genomes]
rs987039	0.81[EUR][1000 genomes]
rs987040	0.81[EUR][1000 genomes]
rs987041	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016852	chr7:89543615-90285174	Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv13271	chr7:89812643-90193186	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv532172	chr7:89950062-90792406	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:89976400-89993800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:89976600-89993800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:89976600-89993800	Weak transcription	Esophagus	oesophagus
4	chr7:89976600-89998600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:89976800-89993800	Weak transcription	Right Ventricle	heart
6	chr7:89976800-90011800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:89977000-89993800	Weak transcription	Fetal Stomach	stomach
8	chr7:89977200-89998000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:89977200-90007400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:89977200-90014200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:89977400-89998600	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:89977400-90003400	Weak transcription	HUVEC	blood vessel
13	chr7:89977400-90010200	Weak transcription	Fetal Heart	heart
14	chr7:89977600-89998400	Weak transcription	Spleen	Spleen
15	chr7:89977600-89998600	Weak transcription	Gastric	stomach
16	chr7:89977600-90016600	Weak transcription	Stomach Mucosa	stomach
17	chr7:89978800-89998400	Weak transcription	Pancreas	Pancrea
18	chr7:89985600-89998400	Weak transcription	Aorta	Aorta
19	chr7:89985600-89998400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:89985800-89998600	Weak transcription	Brain Anterior Caudate	brain
21	chr7:89985800-90009800	Weak transcription	Hela-S3	cervix
22	chr7:89986000-89993600	Weak transcription	Thymus	Thymus
23	chr7:89986000-89993800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:89986000-89993800	Weak transcription	Lung	lung
25	chr7:89986000-89997800	Weak transcription	NHLF	lung
26	chr7:89986000-89998200	Weak transcription	Left Ventricle	heart
27	chr7:89986000-89998400	Weak transcription	Ovary	ovary
28	chr7:89986000-90001400	Weak transcription	Osteobl	bone
29	chr7:89986000-90008200	Weak transcription	Small Intestine	intestine
30	chr7:89986200-89994000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:89986200-89998600	Weak transcription	Colonic Mucosa	Colon
32	chr7:89986600-89998400	Weak transcription	HepG2	liver
33	chr7:89987000-89997800	Weak transcription	Placenta	Placenta
34	chr7:89987400-89997800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr7:89988200-89993800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:89988200-89998200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:89988200-89998200	Weak transcription	Brain Hippocampus Middle	brain
38	chr7:89988200-89998400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr7:89988200-89998400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:89988200-90007400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:89988200-90008200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:89988400-89993200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr7:89988400-89993200	Weak transcription	Fetal Intestine Large	intestine
44	chr7:89988400-89993800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr7:89988400-89993800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:89988400-89993800	Weak transcription	A549	lung
47	chr7:89988400-89994000	Weak transcription	Fetal Thymus	thymus
48	chr7:89988400-89994000	Weak transcription	HSMM	muscle
49	chr7:89988400-89998400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:89988400-89998400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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