Variant report

Variant	rs6454771
Chromosome Location	chr6:65000938-65000939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 217 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:202)

rs_ID	r²[population]
rs1028482	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1028483	0.85[EUR][1000 genomes]
rs1028484	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10806408	0.95[EUR][1000 genomes]
rs10806431	0.83[EUR][1000 genomes]
rs11751189	0.88[EUR][1000 genomes]
rs11751191	0.89[EUR][1000 genomes]
rs11752770	0.88[EUR][1000 genomes]
rs11753432	0.85[EUR][1000 genomes]
rs11758090	0.89[EUR][1000 genomes]
rs11759853	0.87[EUR][1000 genomes]
rs12174056	0.84[EUR][1000 genomes]
rs12175973	0.94[EUR][1000 genomes]
rs12190681	0.93[EUR][1000 genomes]
rs13205132	0.83[EUR][1000 genomes]
rs13209579	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13219120	0.83[EUR][1000 genomes]
rs1338831	0.88[EUR][1000 genomes]
rs1361261	0.89[EUR][1000 genomes]
rs1474829	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1474830	0.95[EUR][1000 genomes]
rs1474831	0.95[EUR][1000 genomes]
rs1474832	0.95[EUR][1000 genomes]
rs1474833	0.95[EUR][1000 genomes]
rs1543405	0.95[EUR][1000 genomes]
rs1555223	0.95[EUR][1000 genomes]
rs1555224	0.95[EUR][1000 genomes]
rs1555225	0.94[EUR][1000 genomes]
rs1555226	0.95[EUR][1000 genomes]
rs16895185	0.89[EUR][1000 genomes]
rs1739409	0.92[EUR][1000 genomes]
rs1884177	0.95[EUR][1000 genomes]
rs1884179	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1922946	0.94[EUR][1000 genomes]
rs1922948	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1922949	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1922954	0.97[EUR][1000 genomes]
rs1922956	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1922957	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922958	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1922959	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1922960	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1922961	0.95[EUR][1000 genomes]
rs1922963	0.95[EUR][1000 genomes]
rs1922964	0.95[EUR][1000 genomes]
rs1922965	0.94[EUR][1000 genomes]
rs1922966	0.94[EUR][1000 genomes]
rs1922967	0.94[EUR][1000 genomes]
rs1922979	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1922980	0.95[EUR][1000 genomes]
rs1922981	0.95[EUR][1000 genomes]
rs2057160	0.95[EUR][1000 genomes]
rs2057161	0.95[EUR][1000 genomes]
rs2057162	0.95[EUR][1000 genomes]
rs2057163	0.93[EUR][1000 genomes]
rs2057164	0.93[EUR][1000 genomes]
rs2057165	0.93[EUR][1000 genomes]
rs2144229	0.93[EUR][1000 genomes]
rs2144230	0.94[EUR][1000 genomes]
rs2180036	0.94[EUR][1000 genomes]
rs2180038	0.94[EUR][1000 genomes]
rs2180039	0.89[EUR][1000 genomes]
rs2207431	0.96[EUR][1000 genomes]
rs34221705	0.83[EUR][1000 genomes]
rs34693171	0.89[EUR][1000 genomes]
rs34932369	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35202570	0.88[EUR][1000 genomes]
rs35544049	0.93[EUR][1000 genomes]
rs3915899	0.95[EUR][1000 genomes]
rs3930877	0.95[EUR][1000 genomes]
rs4084380	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4235968	0.93[EUR][1000 genomes]
rs4235969	0.93[EUR][1000 genomes]
rs4286758	0.89[EUR][1000 genomes]
rs4326220	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4351236	0.94[EUR][1000 genomes]
rs4365910	0.94[EUR][1000 genomes]
rs4435927	0.93[EUR][1000 genomes]
rs4472328	0.94[EUR][1000 genomes]
rs4482959	0.94[EUR][1000 genomes]
rs4504461	0.94[EUR][1000 genomes]
rs4518475	0.92[EUR][1000 genomes]
rs4599616	0.94[EUR][1000 genomes]
rs4645400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4710473	0.94[EUR][1000 genomes]
rs4710474	0.93[EUR][1000 genomes]
rs4710475	0.93[EUR][1000 genomes]
rs4710476	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4710478	0.89[EUR][1000 genomes]
rs585253	0.92[EUR][1000 genomes]
rs585650	0.91[EUR][1000 genomes]
rs587146	0.92[EUR][1000 genomes]
rs596677	0.94[EUR][1000 genomes]
rs596767	0.94[EUR][1000 genomes]
rs607416	0.93[EUR][1000 genomes]
rs609098	0.92[EUR][1000 genomes]
rs610848	0.93[EUR][1000 genomes]
rs622223	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs625112	0.93[EUR][1000 genomes]
rs626227	0.93[EUR][1000 genomes]
rs626316	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs637362	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6454778	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6454779	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6454780	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6454781	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6454782	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs662644	0.88[EUR][1000 genomes]
rs666797	0.92[EUR][1000 genomes]
rs679299	0.92[EUR][1000 genomes]
rs679677	0.91[EUR][1000 genomes]
rs68016062	0.88[EUR][1000 genomes]
rs6903027	0.94[EUR][1000 genomes]
rs6908118	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6908520	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6913077	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6915053	0.94[EUR][1000 genomes]
rs6915412	0.95[EUR][1000 genomes]
rs6916780	0.85[EUR][1000 genomes]
rs6925966	0.95[EUR][1000 genomes]
rs6926103	0.95[EUR][1000 genomes]
rs6927333	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6929549	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6930252	0.95[EUR][1000 genomes]
rs6931855	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6940639	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72887700	0.89[EUR][1000 genomes]
rs7451037	0.95[EUR][1000 genomes]
rs7452152	0.94[EUR][1000 genomes]
rs7739082	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7739628	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7747074	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747790	0.94[EUR][1000 genomes]
rs7748983	0.94[EUR][1000 genomes]
rs7753480	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756960	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7757098	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7758228	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7758253	0.87[EUR][1000 genomes]
rs7758780	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7759081	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7760920	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7764565	0.94[EUR][1000 genomes]
rs7768934	0.94[EUR][1000 genomes]
rs7769524	0.94[EUR][1000 genomes]
rs7773042	0.94[EUR][1000 genomes]
rs875375	0.88[EUR][1000 genomes]
rs9342186	0.94[EUR][1000 genomes]
rs9342187	0.94[EUR][1000 genomes]
rs9342191	0.95[EUR][1000 genomes]
rs9342192	0.95[EUR][1000 genomes]
rs9342197	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9344824	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9344825	0.82[EUR][1000 genomes]
rs9344836	0.84[EUR][1000 genomes]
rs9344916	0.87[EUR][1000 genomes]
rs9344917	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344918	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344919	0.86[EUR][1000 genomes]
rs9344924	0.91[EUR][1000 genomes]
rs9344931	0.95[EUR][1000 genomes]
rs9344936	0.95[EUR][1000 genomes]
rs9351194	0.93[EUR][1000 genomes]
rs9351198	0.93[EUR][1000 genomes]
rs9351199	0.93[EUR][1000 genomes]
rs9351200	0.93[EUR][1000 genomes]
rs9351246	0.89[EUR][1000 genomes]
rs9353658	0.93[EUR][1000 genomes]
rs9353659	0.87[EUR][1000 genomes]
rs9353663	0.94[EUR][1000 genomes]
rs9353665	0.95[EUR][1000 genomes]
rs9353679	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9353682	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9353683	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9353691	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9353806	0.88[EUR][1000 genomes]
rs9359831	0.93[EUR][1000 genomes]
rs9359839	0.94[EUR][1000 genomes]
rs9362521	0.83[EUR][1000 genomes]
rs9362607	0.87[EUR][1000 genomes]
rs9362608	0.94[EUR][1000 genomes]
rs9362635	0.95[EUR][1000 genomes]
rs9362637	0.95[EUR][1000 genomes]
rs9362642	0.95[EUR][1000 genomes]
rs9362645	0.95[EUR][1000 genomes]
rs9362646	0.95[EUR][1000 genomes]
rs9362651	0.95[EUR][1000 genomes]
rs9362656	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9444709	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9444710	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9444712	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9451209	0.88[EUR][1000 genomes]
rs9451222	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9451281	0.88[EUR][1000 genomes]
rs9451282	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9451283	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs956458	0.89[EUR][1000 genomes]
rs973265	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs973266	0.97[EUR][1000 genomes]
rs987039	0.95[EUR][1000 genomes]
rs987040	0.95[EUR][1000 genomes]
rs987041	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015718	chr6:64821273-65479726	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1033519	chr6:64843989-65017528	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv885993	chr6:64885858-65050050	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv885995	chr6:64914258-65050050	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv885996	chr6:64914258-65081343	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv885999	chr6:64946169-65227097	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886000	chr6:64955968-65081343	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv462968	chr6:64971436-65018685	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv462969	chr6:64971436-65018685	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv603390	chr6:64971436-65018685	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv462970	chr6:64971436-65198215	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv603391	chr6:64971436-65198215	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3392614	chr6:64999684-65002578	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64998600-65003000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:65000600-65001200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:65000800-65001400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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