Variant report

Variant	rs9444828
Chromosome Location	chr6:65143008-65143009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10494882	0.96[ASN][1000 genomes]
rs10494883	0.83[ASN][1000 genomes]
rs10626520	0.82[ASN][1000 genomes]
rs10806431	0.94[EUR][1000 genomes]
rs11751189	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11751191	0.86[EUR][1000 genomes]
rs11752770	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11758090	0.86[EUR][1000 genomes]
rs11759853	0.85[EUR][1000 genomes]
rs12176482	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13193668	0.84[ASN][1000 genomes]
rs13194506	0.81[ASN][1000 genomes]
rs13199165	0.85[ASN][1000 genomes]
rs13202092	0.80[ASN][1000 genomes]
rs13212239	0.83[ASN][1000 genomes]
rs13212470	0.80[ASN][1000 genomes]
rs13212894	0.94[ASN][1000 genomes]
rs13218626	0.84[ASN][1000 genomes]
rs1337511	0.85[ASN][1000 genomes]
rs1337512	0.94[ASN][1000 genomes]
rs1337519	0.80[ASN][1000 genomes]
rs1337520	0.80[ASN][1000 genomes]
rs1338831	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1361261	0.86[EUR][1000 genomes]
rs16895185	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16895190	0.87[ASN][1000 genomes]
rs16895262	0.85[ASN][1000 genomes]
rs16895263	0.94[ASN][1000 genomes]
rs16895281	0.84[ASN][1000 genomes]
rs16895329	0.83[ASN][1000 genomes]
rs16895394	0.84[ASN][1000 genomes]
rs1739409	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34221705	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34693171	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35202570	0.83[EUR][1000 genomes]
rs3846796	0.94[ASN][1000 genomes]
rs3904796	0.85[ASN][1000 genomes]
rs4084380	0.81[EUR][1000 genomes]
rs4286758	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4518475	0.82[EUR][1000 genomes]
rs4710478	0.86[EUR][1000 genomes]
rs585253	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs585650	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs587146	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs594182	0.95[ASN][1000 genomes]
rs596677	0.81[EUR][1000 genomes]
rs596767	0.81[EUR][1000 genomes]
rs607416	0.82[EUR][1000 genomes]
rs609098	0.83[EUR][1000 genomes]
rs610848	0.82[EUR][1000 genomes]
rs622223	0.81[EUR][1000 genomes]
rs625112	0.82[EUR][1000 genomes]
rs626227	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs637362	0.81[EUR][1000 genomes]
rs6454778	0.81[EUR][1000 genomes]
rs6454780	0.81[EUR][1000 genomes]
rs6454782	0.81[EUR][1000 genomes]
rs662644	0.87[EUR][1000 genomes]
rs666797	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs679299	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs679677	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68016062	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6908118	0.81[EUR][1000 genomes]
rs6908520	0.81[EUR][1000 genomes]
rs6913077	0.81[EUR][1000 genomes]
rs6920553	0.94[ASN][1000 genomes]
rs6931855	0.81[EUR][1000 genomes]
rs71570681	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72887700	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7739082	0.81[EUR][1000 genomes]
rs7746514	0.94[ASN][1000 genomes]
rs7769524	0.81[EUR][1000 genomes]
rs875375	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9342288	0.94[ASN][1000 genomes]
rs9342308	0.82[ASN][1000 genomes]
rs9344916	0.84[EUR][1000 genomes]
rs9344919	0.83[EUR][1000 genomes]
rs9345146	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9345178	0.95[ASN][1000 genomes]
rs9345179	0.95[ASN][1000 genomes]
rs9345180	0.95[ASN][1000 genomes]
rs9345182	0.84[ASN][1000 genomes]
rs9351246	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9351287	0.95[ASN][1000 genomes]
rs9351291	0.92[ASN][1000 genomes]
rs9353659	0.84[EUR][1000 genomes]
rs9353806	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9353865	0.95[ASN][1000 genomes]
rs9353869	0.84[ASN][1000 genomes]
rs9359957	0.94[ASN][1000 genomes]
rs9359958	0.94[ASN][1000 genomes]
rs9362901	0.94[ASN][1000 genomes]
rs9362909	0.95[ASN][1000 genomes]
rs9362916	0.95[ASN][1000 genomes]
rs9444709	0.81[EUR][1000 genomes]
rs9444712	0.80[EUR][1000 genomes]
rs9451209	0.84[EUR][1000 genomes]
rs9451281	0.88[EUR][1000 genomes]
rs9451283	0.81[EUR][1000 genomes]
rs9451826	0.94[ASN][1000 genomes]
rs956458	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015718	chr6:64821273-65479726	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv885999	chr6:64946169-65227097	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv462970	chr6:64971436-65198215	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv603391	chr6:64971436-65198215	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830675	chr6:65034132-65223344	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1828437	chr6:65098768-65155219	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65142600-65143200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:65142800-65143200	Enhancers	HUES48 Cell Line	embryonic stem cell

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