Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45574169..45577727-chr6:45643786..45647502,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12661654	0.94[ASN][1000 genomes]
rs12663985	0.98[ASN][1000 genomes]
rs12665728	0.94[ASN][1000 genomes]
rs1388242	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1388244	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1491144	0.87[ASN][1000 genomes]
rs1491145	0.85[ASN][1000 genomes]
rs1994682	0.98[ASN][1000 genomes]
rs2035791	0.87[ASN][1000 genomes]
rs2396505	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4326224	0.87[ASN][1000 genomes]
rs4714863	0.83[ASN][1000 genomes]
rs6458457	0.94[ASN][1000 genomes]
rs6919919	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7761790	0.94[ASN][1000 genomes]
rs7762915	0.93[ASN][1000 genomes]
rs7774097	0.96[ASN][1000 genomes]
rs9349322	0.91[ASN][1000 genomes]
rs9349323	0.83[ASN][1000 genomes]
rs9357489	0.85[ASN][1000 genomes]
rs9369572	0.84[ASN][1000 genomes]
rs9395110	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9395111	0.84[ASN][1000 genomes]
rs9472541	0.92[ASN][1000 genomes]
rs9472547	0.99[ASN][1000 genomes]
rs9472548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472552	0.85[ASN][1000 genomes]
rs9472555	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45643400-45647600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:45643400-45647800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:45645000-45647200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:45645400-45647800	Enhancers	Primary B cells from cord blood	blood
5	chr6:45645600-45649800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:45646000-45649600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:45646200-45647200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:45646200-45647200	Weak transcription	Dnd41	blood
9	chr6:45646200-45647400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:45646200-45649600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:45646400-45647400	Weak transcription	Fetal Thymus	thymus
12	chr6:45646400-45648200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:45646600-45647200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:45646800-45650400	ZNF genes & repeats	GM12878-XiMat	blood

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