Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10948245	1.00[CEU][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs10948246	0.91[EUR][1000 genomes]
rs10948248	0.85[EUR][1000 genomes]
rs12175323	0.83[ASN][1000 genomes]
rs12524499	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12661654	0.83[CHB][hapmap]
rs12663985	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs1388243	1.00[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs16873629	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1994682	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs28579170	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3925761	0.89[EUR][1000 genomes]
rs73735437	0.81[EUR][1000 genomes]
rs73735442	0.81[EUR][1000 genomes]
rs7752609	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7762915	0.86[CHB][hapmap]
rs7769966	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9349322	0.86[ASN][1000 genomes]
rs9349323	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357490	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9369568	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9369569	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9381392	0.83[EUR][1000 genomes]
rs9472541	0.91[CHB][hapmap]
rs9472547	0.82[ASN][1000 genomes]
rs9472548	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45631800-45645000	Weak transcription	Colonic Mucosa	Colon
2	chr6:45632000-45643400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:45632600-45643400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:45634200-45642200	Weak transcription	Fetal Thymus	thymus
5	chr6:45634200-45645200	Weak transcription	Right Atrium	heart
6	chr6:45635000-45644800	Weak transcription	NHLF	lung
7	chr6:45635600-45644200	Weak transcription	HSMM	muscle
8	chr6:45635600-45644800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:45635800-45643400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:45636600-45636800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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